Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC26.19■■□□□ 1.78
SMIM28A0A1B0GU29 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
SMIM28A0A1B0GU29 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SMIM28A0A1B0GU29 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
SMIM28A0A1B0GU29 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
SMIM28A0A1B0GU29 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
SMIM28A0A1B0GU29 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC26.18■■□□□ 1.78
SMIM28A0A1B0GU29 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
SMIM28A0A1B0GU29 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC26.17■■□□□ 1.78
SMIM28A0A1B0GU29 RARRES2P1-201ENST00000474487 481 ntBASIC26.17■■□□□ 1.78
SMIM28A0A1B0GU29 AC139795.1-202ENST00000500444 432 ntBASIC26.17■■□□□ 1.78
SMIM28A0A1B0GU29 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.17■■□□□ 1.78
SMIM28A0A1B0GU29 AC010980.1-201ENST00000587192 1142 ntBASIC26.17■■□□□ 1.78
SMIM28A0A1B0GU29 AC074183.2-201ENST00000623112 922 ntBASIC26.17■■□□□ 1.78
SMIM28A0A1B0GU29 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SMIM28A0A1B0GU29 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SMIM28A0A1B0GU29 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
SMIM28A0A1B0GU29 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC26.16■■□□□ 1.78
SMIM28A0A1B0GU29 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.16■■□□□ 1.78
SMIM28A0A1B0GU29 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SMIM28A0A1B0GU29 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.15■■□□□ 1.78
SMIM28A0A1B0GU29 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SMIM28A0A1B0GU29 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SMIM28A0A1B0GU29 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SMIM28A0A1B0GU29 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SMIM28A0A1B0GU29 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SMIM28A0A1B0GU29 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SMIM28A0A1B0GU29 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SMIM28A0A1B0GU29 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SMIM28A0A1B0GU29 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.77
SMIM28A0A1B0GU29 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.77
SMIM28A0A1B0GU29 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.77
SMIM28A0A1B0GU29 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC26.14■■□□□ 1.77
SMIM28A0A1B0GU29 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.13■■□□□ 1.77
SMIM28A0A1B0GU29 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SMIM28A0A1B0GU29 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SMIM28A0A1B0GU29 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SMIM28A0A1B0GU29 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC26.12■■□□□ 1.77
SMIM28A0A1B0GU29 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SMIM28A0A1B0GU29 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC26.12■■□□□ 1.77
SMIM28A0A1B0GU29 PVT1_1.1-201ENST00000615125 194 ntBASIC26.12■■□□□ 1.77
SMIM28A0A1B0GU29 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
SMIM28A0A1B0GU29 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC26.12■■□□□ 1.77
SMIM28A0A1B0GU29 BEX3-202ENST00000372634 753 ntTSL 2 BASIC26.11■■□□□ 1.77
SMIM28A0A1B0GU29 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC26.11■■□□□ 1.77
SMIM28A0A1B0GU29 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SMIM28A0A1B0GU29 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SMIM28A0A1B0GU29 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
SMIM28A0A1B0GU29 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC26.1■■□□□ 1.77
SMIM28A0A1B0GU29 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
SMIM28A0A1B0GU29 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
SMIM28A0A1B0GU29 AC087393.1-201ENST00000582896 145 ntBASIC26.1■■□□□ 1.77
SMIM28A0A1B0GU29 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC26.09■■□□□ 1.77
SMIM28A0A1B0GU29 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
SMIM28A0A1B0GU29 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC26.09■■□□□ 1.77
SMIM28A0A1B0GU29 RPS2P7-201ENST00000447334 885 ntBASIC26.09■■□□□ 1.77
SMIM28A0A1B0GU29 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SMIM28A0A1B0GU29 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SMIM28A0A1B0GU29 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC26.08■■□□□ 1.77
SMIM28A0A1B0GU29 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
SMIM28A0A1B0GU29 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
SMIM28A0A1B0GU29 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
SMIM28A0A1B0GU29 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SMIM28A0A1B0GU29 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC26.07■■□□□ 1.76
SMIM28A0A1B0GU29 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
SMIM28A0A1B0GU29 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
SMIM28A0A1B0GU29 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
SMIM28A0A1B0GU29 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
SMIM28A0A1B0GU29 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
SMIM28A0A1B0GU29 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
SMIM28A0A1B0GU29 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC26.06■■□□□ 1.76
SMIM28A0A1B0GU29 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SMIM28A0A1B0GU29 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
SMIM28A0A1B0GU29 IDNK-201ENST00000376417 511 ntTSL 5 BASIC26.05■■□□□ 1.76
SMIM28A0A1B0GU29 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SMIM28A0A1B0GU29 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
SMIM28A0A1B0GU29 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
SMIM28A0A1B0GU29 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMIM28A0A1B0GU29 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC26.04■■□□□ 1.76
SMIM28A0A1B0GU29 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
SMIM28A0A1B0GU29 MTX2-204ENST00000443241 799 ntTSL 3 BASIC26.04■■□□□ 1.76
SMIM28A0A1B0GU29 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC26.04■■□□□ 1.76
SMIM28A0A1B0GU29 AC103834.1-201ENST00000520383 144 ntBASIC26.04■■□□□ 1.76
SMIM28A0A1B0GU29 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMIM28A0A1B0GU29 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC26.04■■□□□ 1.76
SMIM28A0A1B0GU29 KRT8P33-201ENST00000508125 1423 ntBASIC26.04■■□□□ 1.76
SMIM28A0A1B0GU29 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC26.03■■□□□ 1.76
SMIM28A0A1B0GU29 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC26.03■■□□□ 1.76
SMIM28A0A1B0GU29 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SMIM28A0A1B0GU29 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.03■■□□□ 1.76
SMIM28A0A1B0GU29 PKM-203ENST00000389093 2279 ntTSL 5 BASIC26.03■■□□□ 1.76
SMIM28A0A1B0GU29 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.03■■□□□ 1.76
SMIM28A0A1B0GU29 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SMIM28A0A1B0GU29 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.02■■□□□ 1.76
SMIM28A0A1B0GU29 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SMIM28A0A1B0GU29 KRT18P10-201ENST00000388836 1287 ntBASIC26.02■■□□□ 1.76
SMIM28A0A1B0GU29 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
SMIM28A0A1B0GU29 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
SMIM28A0A1B0GU29 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
SMIM28A0A1B0GU29 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 208.5 ms