Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 PVT1-219ENST00000523427 938 ntTSL 3 BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 LTK-203ENST00000453182 2412 ntTSL 2 BASIC17.33■□□□□ 0.37
TRAV4A0A0B4J268 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV4A0A0B4J268 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV4A0A0B4J268 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV4A0A0B4J268 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV4A0A0B4J268 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC17.33■□□□□ 0.36
TRAV4A0A0B4J268 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV4A0A0B4J268 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV4A0A0B4J268 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV4A0A0B4J268 AC010501.1-201ENST00000606270 1962 ntBASIC17.32■□□□□ 0.36
TRAV4A0A0B4J268 MIR639-201ENST00000384974 98 ntBASIC17.32■□□□□ 0.36
TRAV4A0A0B4J268 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV4A0A0B4J268 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC17.32■□□□□ 0.36
TRAV4A0A0B4J268 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV4A0A0B4J268 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC17.32■□□□□ 0.36
TRAV4A0A0B4J268 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV4A0A0B4J268 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRAV4A0A0B4J268 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV4A0A0B4J268 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV4A0A0B4J268 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV4A0A0B4J268 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV4A0A0B4J268 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV4A0A0B4J268 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV4A0A0B4J268 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV4A0A0B4J268 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV4A0A0B4J268 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV4A0A0B4J268 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAV4A0A0B4J268 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV4A0A0B4J268 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV4A0A0B4J268 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV4A0A0B4J268 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV4A0A0B4J268 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV4A0A0B4J268 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV4A0A0B4J268 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC17.3■□□□□ 0.36
TRAV4A0A0B4J268 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV4A0A0B4J268 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV4A0A0B4J268 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
TRAV4A0A0B4J268 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRAV4A0A0B4J268 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC17.29■□□□□ 0.36
TRAV4A0A0B4J268 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
TRAV4A0A0B4J268 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TRAV4A0A0B4J268 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV4A0A0B4J268 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV4A0A0B4J268 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV4A0A0B4J268 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV4A0A0B4J268 TPT1-202ENST00000379055 948 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV4A0A0B4J268 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV4A0A0B4J268 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV4A0A0B4J268 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAV4A0A0B4J268 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV4A0A0B4J268 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV4A0A0B4J268 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV4A0A0B4J268 ERN1-208ENST00000606895 2068 ntBASIC17.27■□□□□ 0.35
TRAV4A0A0B4J268 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAV4A0A0B4J268 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV4A0A0B4J268 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAV4A0A0B4J268 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC17.25■□□□□ 0.35
TRAV4A0A0B4J268 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV4A0A0B4J268 RPS2-202ENST00000526522 924 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAV4A0A0B4J268 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV4A0A0B4J268 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TRAV4A0A0B4J268 AC060814.1-201ENST00000554326 538 ntBASIC17.25■□□□□ 0.35
TRAV4A0A0B4J268 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
TRAV4A0A0B4J268 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV4A0A0B4J268 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV4A0A0B4J268 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TRAV4A0A0B4J268 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV4A0A0B4J268 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV4A0A0B4J268 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV4A0A0B4J268 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV4A0A0B4J268 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV4A0A0B4J268 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV4A0A0B4J268 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV4A0A0B4J268 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAV4A0A0B4J268 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms