Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 AL161645.1-201ENST00000622716 1255 ntBASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 AC005332.8-201ENST00000622750 2735 ntBASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 MIR943-201ENST00000401286 94 ntBASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 AC107890.1-201ENST00000422478 521 ntBASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 AC002472.2-201ENST00000442739 958 ntBASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 AC243562.1-201ENST00000560672 389 ntBASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 AL135999.2-201ENST00000622438 1686 ntBASIC16.5■□□□□ 0.23
PCDHGA1Q9Y5H4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 AC005225.4-201ENST00000557330 545 ntBASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 AC012645.4-201ENST00000610691 1061 ntBASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 AC046185.3-201ENST00000623228 1824 ntBASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA1Q9Y5H4 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms