Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 SPDYE11-202ENST00000450699 704 ntBASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 SPDYE9P-201ENST00000570642 692 ntBASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 SPDYE10P-202ENST00000612005 668 ntBASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 SPDYE8P-202ENST00000612377 668 ntBASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC32.54■■■□□ 2.8
SHROOM4Q9ULL8 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 AL355312.1-201ENST00000407115 2176 ntBASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 AL008721.1-201ENST00000609964 604 ntBASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC32.53■■■□□ 2.8
SHROOM4Q9ULL8 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 FAM185BP-201ENST00000443595 716 ntBASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 THTPA-204ENST00000554970 569 ntTSL 4 BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 THTPA-206ENST00000556015 535 ntTSL 3 BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 AL139327.4-201ENST00000612362 153 ntBASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 AC084121.4-201ENST00000641598 221 ntBASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 AF228730.8-201ENST00000642140 221 ntBASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 CD276-203ENST00000537340 2439 ntTSL 2 BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 AIRN-201ENST00000601203 4374 ntBASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC32.52■■■□□ 2.8
SHROOM4Q9ULL8 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC32.51■■■□□ 2.8
SHROOM4Q9ULL8 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC32.51■■■□□ 2.8
SHROOM4Q9ULL8 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
SHROOM4Q9ULL8 ENSA-206ENST00000361631 725 ntTSL 2 BASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 GOLGA6L11P-201ENST00000417252 1298 ntBASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 SLC25A39P2-201ENST00000537614 270 ntBASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 LYSMD4-203ENST00000378904 2122 ntBASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
SHROOM4Q9ULL8 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 SLC25A6P2-201ENST00000497974 877 ntBASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 AL390754.1-201ENST00000619088 582 ntBASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC32.5■■■□□ 2.79
SHROOM4Q9ULL8 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC32.49■■■□□ 2.79
SHROOM4Q9ULL8 FO538757.1-201ENST00000623083 1397 ntBASIC32.49■■■□□ 2.79
SHROOM4Q9ULL8 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC32.49■■■□□ 2.79
SHROOM4Q9ULL8 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
SHROOM4Q9ULL8 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC32.49■■■□□ 2.79
SHROOM4Q9ULL8 AC079140.1-201ENST00000508039 487 ntBASIC32.49■■■□□ 2.79
SHROOM4Q9ULL8 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
SHROOM4Q9ULL8 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
SHROOM4Q9ULL8 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC32.49■■■□□ 2.79
SHROOM4Q9ULL8 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC32.49■■■□□ 2.79
SHROOM4Q9ULL8 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC32.49■■■□□ 2.79
SHROOM4Q9ULL8 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms