Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.43
USP29Q9HBJ7 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
USP29Q9HBJ7 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.77■□□□□ 0.43
USP29Q9HBJ7 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
USP29Q9HBJ7 AC090340.1-201ENST00000620778 4980 ntBASIC17.77■□□□□ 0.43
USP29Q9HBJ7 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 AC003669.1-201ENST00000334569 611 ntBASIC17.76■□□□□ 0.43
USP29Q9HBJ7 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 NUS1P2-201ENST00000417358 873 ntBASIC17.76■□□□□ 0.43
USP29Q9HBJ7 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.76■□□□□ 0.43
USP29Q9HBJ7 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 AC073592.5-201ENST00000624854 528 ntBASIC17.76■□□□□ 0.43
USP29Q9HBJ7 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.76■□□□□ 0.43
USP29Q9HBJ7 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 EGFEM1P-202ENST00000431685 1563 ntBASIC17.75■□□□□ 0.43
USP29Q9HBJ7 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 AKR1C7P-201ENST00000305623 895 ntBASIC17.75■□□□□ 0.43
USP29Q9HBJ7 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 BX640515.1-201ENST00000617215 977 ntBASIC17.75■□□□□ 0.43
USP29Q9HBJ7 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP29Q9HBJ7 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 AC092068.3-201ENST00000587894 2016 ntBASIC17.74■□□□□ 0.43
USP29Q9HBJ7 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USP29Q9HBJ7 AC124947.2-201ENST00000547118 1133 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms