Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC15.28■□□□□ 0.04
MMP28Q9H239 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MMP28Q9H239 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
MMP28Q9H239 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
MMP28Q9H239 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC15.27■□□□□ 0.04
MMP28Q9H239 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.27■□□□□ 0.04
MMP28Q9H239 AC092338.2-201ENST00000568827 1415 ntBASIC15.27■□□□□ 0.04
MMP28Q9H239 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.27■□□□□ 0.04
MMP28Q9H239 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
MMP28Q9H239 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 ENSA-205ENST00000361532 792 ntTSL 2 BASIC15.27■□□□□ 0.04
MMP28Q9H239 AL023284.2-201ENST00000405850 579 ntBASIC15.27■□□□□ 0.04
MMP28Q9H239 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
MMP28Q9H239 AP003041.3-201ENST00000527151 707 ntBASIC15.27■□□□□ 0.04
MMP28Q9H239 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC15.27■□□□□ 0.04
MMP28Q9H239 AC104640.1-201ENST00000562617 2109 ntBASIC15.27■□□□□ 0.04
MMP28Q9H239 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC15.27■□□□□ 0.04
MMP28Q9H239 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MMP28Q9H239 AC005363.2-201ENST00000618631 242 ntBASIC15.27■□□□□ 0.04
MMP28Q9H239 GPAT2P1-201ENST00000444924 1672 ntBASIC15.27■□□□□ 0.03
MMP28Q9H239 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MMP28Q9H239 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
MMP28Q9H239 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC15.27■□□□□ 0.03
MMP28Q9H239 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
MMP28Q9H239 SDHAP2-201ENST00000455183 2001 ntBASIC15.27■□□□□ 0.03
MMP28Q9H239 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
MMP28Q9H239 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MMP28Q9H239 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
MMP28Q9H239 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
MMP28Q9H239 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
MMP28Q9H239 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.27■□□□□ 0.03
MMP28Q9H239 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
MMP28Q9H239 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
MMP28Q9H239 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
MMP28Q9H239 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.27■□□□□ 0.03
MMP28Q9H239 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MMP28Q9H239 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
MMP28Q9H239 CYP2D8P-201ENST00000433633 1490 ntBASIC15.27■□□□□ 0.03
MMP28Q9H239 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
MMP28Q9H239 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
MMP28Q9H239 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.26■□□□□ 0.03
MMP28Q9H239 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
MMP28Q9H239 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
MMP28Q9H239 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
MMP28Q9H239 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC15.26■□□□□ 0.03
MMP28Q9H239 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC15.26■□□□□ 0.03
MMP28Q9H239 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.26■□□□□ 0.03
MMP28Q9H239 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC15.26■□□□□ 0.03
MMP28Q9H239 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC15.26■□□□□ 0.03
MMP28Q9H239 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC15.26■□□□□ 0.03
MMP28Q9H239 AC010947.1-201ENST00000623454 693 ntBASIC15.26■□□□□ 0.03
MMP28Q9H239 AC010653.2-201ENST00000623505 997 ntBASIC15.26■□□□□ 0.03
MMP28Q9H239 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.26■□□□□ 0.03
MMP28Q9H239 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
MMP28Q9H239 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
MMP28Q9H239 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC15.26■□□□□ 0.03
MMP28Q9H239 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 AC092384.3-202ENST00000564646 2873 ntBASIC15.26■□□□□ 0.03
MMP28Q9H239 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
MMP28Q9H239 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MMP28Q9H239 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MMP28Q9H239 AC078925.2-201ENST00000624013 1973 ntBASIC15.25■□□□□ 0.03
MMP28Q9H239 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
MMP28Q9H239 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
MMP28Q9H239 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
MMP28Q9H239 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC15.25■□□□□ 0.03
MMP28Q9H239 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms