Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 INE1-201ENST00000456273 945 ntBASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 HLA-V-204ENST00000476601 1289 ntBASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.42■□□□□ 0.86
ZNF541Q9H0D2 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 AC245100.3-201ENST00000441281 285 ntBASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 AP3S2-216ENST00000617003 1561 ntBASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 GRAMD4P3-201ENST00000621665 1669 ntBASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF541Q9H0D2 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 RPS2P32-201ENST00000439199 892 ntBASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 AC017083.2-201ENST00000608069 979 ntBASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 AL844908.2-201ENST00000609461 460 ntBASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.4■□□□□ 0.86
ZNF541Q9H0D2 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF541Q9H0D2 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.39■□□□□ 0.86
ZNF541Q9H0D2 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
ZNF541Q9H0D2 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF541Q9H0D2 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 DGCR5-201ENST00000399539 862 ntBASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 HCG4-201ENST00000418983 998 ntBASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 AC004840.1-201ENST00000636359 365 ntBASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms