Protein–RNA interactions for Protein: Q99732

LITAF, Lipopolysaccharide-induced tumor necrosis factor-alpha factor, humanhuman

Predictions only

Length 161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LITAFQ99732 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 AC010491.1-201ENST00000563101 2797 ntBASIC11.48□□□□□ -0.57
LITAFQ99732 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC11.48□□□□□ -0.57
LITAFQ99732 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
LITAFQ99732 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
LITAFQ99732 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC11.48□□□□□ -0.57
LITAFQ99732 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
LITAFQ99732 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC11.48□□□□□ -0.57
LITAFQ99732 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC11.48□□□□□ -0.57
LITAFQ99732 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC11.48□□□□□ -0.57
LITAFQ99732 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC11.48□□□□□ -0.57
LITAFQ99732 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC11.48□□□□□ -0.57
LITAFQ99732 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC11.48□□□□□ -0.57
LITAFQ99732 SLC25A1P4-201ENST00000567977 778 ntBASIC11.48□□□□□ -0.57
LITAFQ99732 DGCR10-201ENST00000609839 495 ntBASIC11.48□□□□□ -0.57
LITAFQ99732 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 CABP2-204ENST00000636477 941 ntTSL 5 BASIC11.48□□□□□ -0.57
LITAFQ99732 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
LITAFQ99732 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 FRMD8P1-201ENST00000440433 1524 ntBASIC11.48□□□□□ -0.57
LITAFQ99732 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 AMT-206ENST00000458307 1860 ntTSL 2 BASIC11.48□□□□□ -0.57
LITAFQ99732 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC11.48□□□□□ -0.57
LITAFQ99732 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
LITAFQ99732 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LITAFQ99732 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
LITAFQ99732 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC11.47□□□□□ -0.57
LITAFQ99732 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
LITAFQ99732 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
LITAFQ99732 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC11.47□□□□□ -0.57
LITAFQ99732 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
LITAFQ99732 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC11.47□□□□□ -0.57
LITAFQ99732 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC11.47□□□□□ -0.57
LITAFQ99732 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC11.47□□□□□ -0.57
LITAFQ99732 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC11.47□□□□□ -0.57
LITAFQ99732 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC11.47□□□□□ -0.57
LITAFQ99732 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
LITAFQ99732 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 NCF1B-203ENST00000435988 1254 ntBASIC11.47□□□□□ -0.57
LITAFQ99732 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC11.47□□□□□ -0.57
LITAFQ99732 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 AP003097.1-201ENST00000530657 1135 ntBASIC11.47□□□□□ -0.57
LITAFQ99732 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC11.47□□□□□ -0.57
LITAFQ99732 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC11.47□□□□□ -0.57
LITAFQ99732 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC11.47□□□□□ -0.57
LITAFQ99732 AC073195.1-201ENST00000607241 877 ntBASIC11.47□□□□□ -0.57
LITAFQ99732 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC11.47□□□□□ -0.57
LITAFQ99732 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
LITAFQ99732 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LITAFQ99732 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC11.47□□□□□ -0.57
LITAFQ99732 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms