Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC28.1■■■□□ 2.09
IFT140Q96RY7 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC28.1■■■□□ 2.09
IFT140Q96RY7 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
IFT140Q96RY7 AC092933.1-201ENST00000393644 945 ntBASIC28.09■■■□□ 2.09
IFT140Q96RY7 AC114501.2-201ENST00000439631 535 ntBASIC28.09■■■□□ 2.09
IFT140Q96RY7 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC28.09■■■□□ 2.09
IFT140Q96RY7 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC28.09■■■□□ 2.09
IFT140Q96RY7 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC28.09■■■□□ 2.09
IFT140Q96RY7 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
IFT140Q96RY7 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC28.09■■■□□ 2.09
IFT140Q96RY7 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC28.09■■■□□ 2.09
IFT140Q96RY7 AC021097.1-201ENST00000607902 574 ntBASIC28.09■■■□□ 2.09
IFT140Q96RY7 AC133552.6-201ENST00000613406 534 ntBASIC28.09■■■□□ 2.09
IFT140Q96RY7 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC28.09■■■□□ 2.09
IFT140Q96RY7 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC28.09■■■□□ 2.09
IFT140Q96RY7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
IFT140Q96RY7 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC28.09■■■□□ 2.09
IFT140Q96RY7 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC28.09■■■□□ 2.09
IFT140Q96RY7 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
IFT140Q96RY7 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
IFT140Q96RY7 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC28.09■■■□□ 2.09
IFT140Q96RY7 BNIP3P42-201ENST00000454982 569 ntBASIC28.08■■■□□ 2.09
IFT140Q96RY7 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
IFT140Q96RY7 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
IFT140Q96RY7 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC28.08■■■□□ 2.09
IFT140Q96RY7 BNIP3P29-201ENST00000598302 571 ntBASIC28.08■■■□□ 2.09
IFT140Q96RY7 AC011447.5-201ENST00000616168 564 ntBASIC28.08■■■□□ 2.09
IFT140Q96RY7 MIR6775-201ENST00000617557 69 ntBASIC28.08■■■□□ 2.09
IFT140Q96RY7 AC068587.10-201ENST00000641210 219 ntBASIC28.08■■■□□ 2.09
IFT140Q96RY7 AL109936.8-201ENST00000641772 604 ntBASIC28.08■■■□□ 2.09
IFT140Q96RY7 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC28.08■■■□□ 2.09
IFT140Q96RY7 CROCCP3-202ENST00000420820 1947 ntBASIC28.08■■■□□ 2.09
IFT140Q96RY7 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
IFT140Q96RY7 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
IFT140Q96RY7 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC28.08■■■□□ 2.09
IFT140Q96RY7 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC28.08■■■□□ 2.09
IFT140Q96RY7 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
IFT140Q96RY7 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
IFT140Q96RY7 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
IFT140Q96RY7 RN7SL618P-201ENST00000477850 296 ntBASIC28.08■■■□□ 2.09
IFT140Q96RY7 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC28.08■■■□□ 2.09
IFT140Q96RY7 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
IFT140Q96RY7 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.08
IFT140Q96RY7 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
IFT140Q96RY7 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC28.07■■■□□ 2.08
IFT140Q96RY7 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC28.07■■■□□ 2.08
IFT140Q96RY7 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC28.07■■■□□ 2.08
IFT140Q96RY7 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
IFT140Q96RY7 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC28.07■■■□□ 2.08
IFT140Q96RY7 AC135776.1-201ENST00000319817 2481 ntBASIC28.07■■■□□ 2.08
IFT140Q96RY7 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
IFT140Q96RY7 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC28.07■■■□□ 2.08
IFT140Q96RY7 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC28.07■■■□□ 2.08
IFT140Q96RY7 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC28.07■■■□□ 2.08
IFT140Q96RY7 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC28.07■■■□□ 2.08
IFT140Q96RY7 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC28.07■■■□□ 2.08
IFT140Q96RY7 ELK1P1-201ENST00000485699 580 ntBASIC28.07■■■□□ 2.08
IFT140Q96RY7 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC28.07■■■□□ 2.08
IFT140Q96RY7 AC105021.1-202ENST00000570572 669 ntBASIC28.07■■■□□ 2.08
IFT140Q96RY7 MIR4538-201ENST00000581377 78 ntBASIC28.07■■■□□ 2.08
IFT140Q96RY7 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC28.07■■■□□ 2.08
IFT140Q96RY7 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
IFT140Q96RY7 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC28.07■■■□□ 2.08
IFT140Q96RY7 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC28.06■■■□□ 2.08
IFT140Q96RY7 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC28.06■■■□□ 2.08
IFT140Q96RY7 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
IFT140Q96RY7 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC28.06■■■□□ 2.08
IFT140Q96RY7 KRT8P44-201ENST00000441609 1350 ntBASIC28.06■■■□□ 2.08
IFT140Q96RY7 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
IFT140Q96RY7 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC28.06■■■□□ 2.08
IFT140Q96RY7 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
IFT140Q96RY7 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
IFT140Q96RY7 OSM-203ENST00000403463 464 ntTSL 3 BASIC28.06■■■□□ 2.08
IFT140Q96RY7 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC28.06■■■□□ 2.08
IFT140Q96RY7 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC28.06■■■□□ 2.08
IFT140Q96RY7 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC28.06■■■□□ 2.08
IFT140Q96RY7 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC28.06■■■□□ 2.08
IFT140Q96RY7 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
IFT140Q96RY7 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC28.05■■■□□ 2.08
IFT140Q96RY7 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC28.05■■■□□ 2.08
IFT140Q96RY7 KRT18P34-201ENST00000488218 1270 ntBASIC28.05■■■□□ 2.08
IFT140Q96RY7 AC008735.3-201ENST00000596646 500 ntBASIC28.05■■■□□ 2.08
IFT140Q96RY7 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC28.05■■■□□ 2.08
IFT140Q96RY7 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC28.05■■■□□ 2.08
IFT140Q96RY7 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC28.05■■■□□ 2.08
IFT140Q96RY7 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC28.05■■■□□ 2.08
IFT140Q96RY7 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC28.05■■■□□ 2.08
IFT140Q96RY7 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
IFT140Q96RY7 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC28.04■■■□□ 2.08
IFT140Q96RY7 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
IFT140Q96RY7 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC28.04■■■□□ 2.08
IFT140Q96RY7 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC28.04■■■□□ 2.08
IFT140Q96RY7 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC28.04■■■□□ 2.08
IFT140Q96RY7 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
IFT140Q96RY7 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC28.04■■■□□ 2.08
IFT140Q96RY7 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC28.04■■■□□ 2.08
IFT140Q96RY7 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC28.04■■■□□ 2.08
IFT140Q96RY7 AP001350.2-201ENST00000625104 1094 ntBASIC28.04■■■□□ 2.08
IFT140Q96RY7 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
IFT140Q96RY7 HARS-204ENST00000438307 1789 ntTSL 2 BASIC28.04■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms