Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
ABCA4P78363 AC007274.1-201ENST00000439805 662 ntBASIC14.8□□□□□ -0.04
ABCA4P78363 AC002472.2-201ENST00000442739 958 ntBASIC14.8□□□□□ -0.04
ABCA4P78363 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.8□□□□□ -0.04
ABCA4P78363 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA4P78363 AC069335.1-201ENST00000489972 472 ntBASIC14.8□□□□□ -0.04
ABCA4P78363 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA4P78363 DUX4L17-201ENST00000557360 1267 ntBASIC14.8□□□□□ -0.04
ABCA4P78363 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.8□□□□□ -0.04
ABCA4P78363 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
ABCA4P78363 AL008721.1-201ENST00000609964 604 ntBASIC14.8□□□□□ -0.04
ABCA4P78363 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
ABCA4P78363 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA4P78363 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.79□□□□□ -0.04
ABCA4P78363 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.79□□□□□ -0.04
ABCA4P78363 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
ABCA4P78363 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
ABCA4P78363 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.79□□□□□ -0.04
ABCA4P78363 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.79□□□□□ -0.04
ABCA4P78363 AC067863.1-201ENST00000494933 530 ntBASIC14.79□□□□□ -0.04
ABCA4P78363 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.79□□□□□ -0.04
ABCA4P78363 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.79□□□□□ -0.04
ABCA4P78363 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.79□□□□□ -0.04
ABCA4P78363 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.79□□□□□ -0.04
ABCA4P78363 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.79□□□□□ -0.04
ABCA4P78363 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.79□□□□□ -0.04
ABCA4P78363 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC14.79□□□□□ -0.04
ABCA4P78363 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
ABCA4P78363 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC14.79□□□□□ -0.04
ABCA4P78363 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.79□□□□□ -0.04
ABCA4P78363 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.79□□□□□ -0.04
ABCA4P78363 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA4P78363 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.79□□□□□ -0.04
ABCA4P78363 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
ABCA4P78363 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC14.78□□□□□ -0.04
ABCA4P78363 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.78□□□□□ -0.04
ABCA4P78363 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.78□□□□□ -0.04
ABCA4P78363 MIR4745-201ENST00000577608 62 ntBASIC14.78□□□□□ -0.04
ABCA4P78363 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
ABCA4P78363 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
ABCA4P78363 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC14.78□□□□□ -0.04
ABCA4P78363 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
ABCA4P78363 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 AL135999.2-201ENST00000622438 1686 ntBASIC14.78□□□□□ -0.04
ABCA4P78363 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
ABCA4P78363 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC14.78□□□□□ -0.04
ABCA4P78363 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
ABCA4P78363 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC14.78□□□□□ -0.04
ABCA4P78363 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.78□□□□□ -0.04
ABCA4P78363 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.78□□□□□ -0.04
ABCA4P78363 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
ABCA4P78363 MEIS3P1-201ENST00000495167 958 ntBASIC14.78□□□□□ -0.04
ABCA4P78363 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.78□□□□□ -0.04
ABCA4P78363 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.78□□□□□ -0.04
ABCA4P78363 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.78□□□□□ -0.04
ABCA4P78363 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC14.78□□□□□ -0.04
ABCA4P78363 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.78□□□□□ -0.04
ABCA4P78363 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
ABCA4P78363 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
ABCA4P78363 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
ABCA4P78363 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms