Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC20.43■□□□□ 0.86
COL4A5P29400 TEX28P1-201ENST00000613479 1221 ntBASIC20.43■□□□□ 0.86
COL4A5P29400 TEX28P2-201ENST00000617764 1221 ntBASIC20.43■□□□□ 0.86
COL4A5P29400 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.43■□□□□ 0.86
COL4A5P29400 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.43■□□□□ 0.86
COL4A5P29400 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A5P29400 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.43■□□□□ 0.86
COL4A5P29400 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.42■□□□□ 0.86
COL4A5P29400 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A5P29400 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC20.42■□□□□ 0.86
COL4A5P29400 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC20.42■□□□□ 0.86
COL4A5P29400 AC091167.2-201ENST00000579581 588 ntBASIC20.42■□□□□ 0.86
COL4A5P29400 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.42■□□□□ 0.86
COL4A5P29400 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A5P29400 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
COL4A5P29400 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A5P29400 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A5P29400 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A5P29400 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A5P29400 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A5P29400 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.42■□□□□ 0.86
COL4A5P29400 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
COL4A5P29400 IFT20-216ENST00000588477 774 ntTSL 5 BASIC20.42■□□□□ 0.86
COL4A5P29400 WT1-AS_2.1-201ENST00000613208 137 ntBASIC20.42■□□□□ 0.86
COL4A5P29400 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.42■□□□□ 0.86
COL4A5P29400 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC20.42■□□□□ 0.86
COL4A5P29400 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC20.41■□□□□ 0.86
COL4A5P29400 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
COL4A5P29400 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A5P29400 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
COL4A5P29400 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A5P29400 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.41■□□□□ 0.86
COL4A5P29400 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
COL4A5P29400 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A5P29400 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
COL4A5P29400 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC20.41■□□□□ 0.86
COL4A5P29400 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A5P29400 AC105233.2-201ENST00000523697 349 ntBASIC20.41■□□□□ 0.86
COL4A5P29400 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC20.41■□□□□ 0.86
COL4A5P29400 AF228730.5-201ENST00000530288 346 ntBASIC20.41■□□□□ 0.86
COL4A5P29400 TP53TG3HP-202ENST00000569755 579 ntBASIC20.41■□□□□ 0.86
COL4A5P29400 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.41■□□□□ 0.86
COL4A5P29400 AC073389.1-201ENST00000595595 795 ntBASIC20.41■□□□□ 0.86
COL4A5P29400 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.41■□□□□ 0.86
COL4A5P29400 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.41■□□□□ 0.86
COL4A5P29400 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A5P29400 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A5P29400 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.41■□□□□ 0.86
COL4A5P29400 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A5P29400 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A5P29400 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A5P29400 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A5P29400 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.4■□□□□ 0.86
COL4A5P29400 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.4■□□□□ 0.86
COL4A5P29400 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL4A5P29400 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
COL4A5P29400 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL4A5P29400 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
COL4A5P29400 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC20.4■□□□□ 0.86
COL4A5P29400 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC20.4■□□□□ 0.86
COL4A5P29400 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC20.4■□□□□ 0.86
COL4A5P29400 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL4A5P29400 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.4■□□□□ 0.86
COL4A5P29400 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC20.4■□□□□ 0.86
COL4A5P29400 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.4■□□□□ 0.86
COL4A5P29400 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL4A5P29400 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
COL4A5P29400 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL4A5P29400 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A5P29400 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A5P29400 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A5P29400 KRT17P7-201ENST00000451704 1104 ntBASIC20.39■□□□□ 0.86
COL4A5P29400 HLA-V-204ENST00000476601 1289 ntBASIC20.39■□□□□ 0.86
COL4A5P29400 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC20.39■□□□□ 0.86
COL4A5P29400 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A5P29400 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A5P29400 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL4A5P29400 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A5P29400 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.39■□□□□ 0.85
COL4A5P29400 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
COL4A5P29400 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A5P29400 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC20.39■□□□□ 0.85
COL4A5P29400 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
COL4A5P29400 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A5P29400 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL4A5P29400 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
COL4A5P29400 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
COL4A5P29400 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC20.38■□□□□ 0.85
COL4A5P29400 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.38■□□□□ 0.85
COL4A5P29400 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC20.38■□□□□ 0.85
COL4A5P29400 AC140912.1-201ENST00000577171 1054 ntBASIC20.38■□□□□ 0.85
COL4A5P29400 AC003101.2-201ENST00000612557 442 ntBASIC20.38■□□□□ 0.85
COL4A5P29400 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
COL4A5P29400 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC20.38■□□□□ 0.85
COL4A5P29400 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A5P29400 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms