Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.85■□□□□ 0.29
PCNAP12004 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
PCNAP12004 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
PCNAP12004 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 MYCLP1-201ENST00000372451 1075 ntBASIC16.85■□□□□ 0.29
PCNAP12004 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
PCNAP12004 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
PCNAP12004 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
PCNAP12004 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.85■□□□□ 0.29
PCNAP12004 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.85■□□□□ 0.29
PCNAP12004 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.85■□□□□ 0.29
PCNAP12004 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.85■□□□□ 0.29
PCNAP12004 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.85■□□□□ 0.29
PCNAP12004 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.85■□□□□ 0.29
PCNAP12004 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.85■□□□□ 0.29
PCNAP12004 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
PCNAP12004 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.85■□□□□ 0.29
PCNAP12004 AL356309.3-201ENST00000624132 1934 ntBASIC16.85■□□□□ 0.29
PCNAP12004 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.85■□□□□ 0.29
PCNAP12004 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PCNAP12004 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 NSUN5P1-202ENST00000421140 1535 ntBASIC16.85■□□□□ 0.29
PCNAP12004 NSUN5P2-203ENST00000457352 1529 ntBASIC16.85■□□□□ 0.29
PCNAP12004 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.85■□□□□ 0.29
PCNAP12004 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.85■□□□□ 0.29
PCNAP12004 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.84■□□□□ 0.29
PCNAP12004 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.84■□□□□ 0.29
PCNAP12004 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PCNAP12004 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCNAP12004 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.84■□□□□ 0.29
PCNAP12004 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
PCNAP12004 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.84■□□□□ 0.29
PCNAP12004 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCNAP12004 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.84■□□□□ 0.29
PCNAP12004 AL118508.1-201ENST00000613502 2345 ntBASIC16.84■□□□□ 0.29
PCNAP12004 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PCNAP12004 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCNAP12004 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PCNAP12004 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCNAP12004 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PCNAP12004 AC103564.2-201ENST00000432853 1299 ntBASIC16.84■□□□□ 0.29
PCNAP12004 AC104819.1-201ENST00000504587 486 ntBASIC16.84■□□□□ 0.29
PCNAP12004 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.84■□□□□ 0.29
PCNAP12004 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.84■□□□□ 0.29
PCNAP12004 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.84■□□□□ 0.29
PCNAP12004 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.84■□□□□ 0.29
PCNAP12004 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCNAP12004 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.84■□□□□ 0.29
PCNAP12004 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCNAP12004 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCNAP12004 TP73-AS1-210ENST00000637775 1455 ntBASIC16.84■□□□□ 0.29
PCNAP12004 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCNAP12004 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.84■□□□□ 0.29
PCNAP12004 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.84■□□□□ 0.29
PCNAP12004 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCNAP12004 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PCNAP12004 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.84■□□□□ 0.29
PCNAP12004 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
PCNAP12004 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
PCNAP12004 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PCNAP12004 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
PCNAP12004 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.83■□□□□ 0.28
PCNAP12004 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCNAP12004 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PCNAP12004 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCNAP12004 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCNAP12004 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCNAP12004 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.83■□□□□ 0.28
PCNAP12004 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PCNAP12004 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.83■□□□□ 0.28
PCNAP12004 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.83■□□□□ 0.28
PCNAP12004 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.83■□□□□ 0.28
PCNAP12004 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PCNAP12004 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.83■□□□□ 0.28
PCNAP12004 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
PCNAP12004 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.83■□□□□ 0.28
PCNAP12004 MIR3180-1-201ENST00000580374 94 ntBASIC16.83■□□□□ 0.28
PCNAP12004 MIR3180-3-201ENST00000584616 94 ntBASIC16.83■□□□□ 0.28
PCNAP12004 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.83■□□□□ 0.28
PCNAP12004 AC092329.2-201ENST00000598402 547 ntBASIC16.83■□□□□ 0.28
PCNAP12004 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.83■□□□□ 0.28
PCNAP12004 NPAP1P7-201ENST00000613027 823 ntBASIC16.83■□□□□ 0.28
PCNAP12004 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCNAP12004 FER1L4-210ENST00000615531 5998 ntBASIC16.83■□□□□ 0.28
PCNAP12004 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCNAP12004 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.83■□□□□ 0.28
PCNAP12004 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms