Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
SDC3O75056 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.83■□□□□ 0.28
SDC3O75056 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC3O75056 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC3O75056 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC3O75056 FAM185BP-201ENST00000443595 716 ntBASIC16.83■□□□□ 0.28
SDC3O75056 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SDC3O75056 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.83■□□□□ 0.28
SDC3O75056 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC3O75056 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC3O75056 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC3O75056 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.83■□□□□ 0.28
SDC3O75056 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.83■□□□□ 0.28
SDC3O75056 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC3O75056 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.83■□□□□ 0.28
SDC3O75056 ACTL9-202ENST00000612068 1252 ntBASIC16.83■□□□□ 0.28
SDC3O75056 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.83■□□□□ 0.28
SDC3O75056 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDC3O75056 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.83■□□□□ 0.28
SDC3O75056 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
SDC3O75056 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC3O75056 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SDC3O75056 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.82■□□□□ 0.28
SDC3O75056 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.82■□□□□ 0.28
SDC3O75056 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
SDC3O75056 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC3O75056 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 AL139400.1-201ENST00000366220 510 ntBASIC16.82■□□□□ 0.28
SDC3O75056 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 AC004461.1-201ENST00000412461 403 ntBASIC16.82■□□□□ 0.28
SDC3O75056 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.82■□□□□ 0.28
SDC3O75056 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC3O75056 SLC25A6P2-201ENST00000497974 877 ntBASIC16.82■□□□□ 0.28
SDC3O75056 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC3O75056 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.82■□□□□ 0.28
SDC3O75056 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC3O75056 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.82■□□□□ 0.28
SDC3O75056 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.82■□□□□ 0.28
SDC3O75056 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.82■□□□□ 0.28
SDC3O75056 AC004835.2-201ENST00000603762 682 ntBASIC16.82■□□□□ 0.28
SDC3O75056 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC3O75056 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC3O75056 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.82■□□□□ 0.28
SDC3O75056 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.82■□□□□ 0.28
SDC3O75056 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDC3O75056 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.82■□□□□ 0.28
SDC3O75056 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.81■□□□□ 0.28
SDC3O75056 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.81■□□□□ 0.28
SDC3O75056 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.81■□□□□ 0.28
SDC3O75056 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SDC3O75056 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
SDC3O75056 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.81■□□□□ 0.28
SDC3O75056 AC087163.2-201ENST00000457299 853 ntBASIC16.81■□□□□ 0.28
SDC3O75056 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 AC004449.1-201ENST00000564240 433 ntBASIC16.81■□□□□ 0.28
SDC3O75056 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 AL139327.4-201ENST00000612362 153 ntBASIC16.81■□□□□ 0.28
SDC3O75056 AL513210.1-201ENST00000629608 234 ntBASIC16.81■□□□□ 0.28
SDC3O75056 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.81■□□□□ 0.28
SDC3O75056 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SDC3O75056 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.81■□□□□ 0.28
SDC3O75056 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
SDC3O75056 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
SDC3O75056 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.81■□□□□ 0.28
SDC3O75056 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDC3O75056 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms