Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB2O43679 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB2O43679 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.23■□□□□ 0.35
LDB2O43679 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
LDB2O43679 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.23■□□□□ 0.35
LDB2O43679 AC026396.1-201ENST00000419388 421 ntBASIC17.23■□□□□ 0.35
LDB2O43679 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.23■□□□□ 0.35
LDB2O43679 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.23■□□□□ 0.35
LDB2O43679 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
LDB2O43679 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LDB2O43679 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.23■□□□□ 0.35
LDB2O43679 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.23■□□□□ 0.35
LDB2O43679 MTDHP4-201ENST00000600287 670 ntBASIC17.23■□□□□ 0.35
LDB2O43679 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB2O43679 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.23■□□□□ 0.35
LDB2O43679 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB2O43679 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB2O43679 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB2O43679 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.23■□□□□ 0.35
LDB2O43679 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB2O43679 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
LDB2O43679 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.23■□□□□ 0.35
LDB2O43679 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LDB2O43679 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB2O43679 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
LDB2O43679 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB2O43679 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB2O43679 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB2O43679 AL590787.1-201ENST00000568856 1315 ntBASIC17.22■□□□□ 0.35
LDB2O43679 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LDB2O43679 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB2O43679 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LDB2O43679 NCF1C-201ENST00000438382 1427 ntBASIC17.22■□□□□ 0.35
LDB2O43679 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LDB2O43679 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB2O43679 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB2O43679 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.22■□□□□ 0.35
LDB2O43679 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
LDB2O43679 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
LDB2O43679 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB2O43679 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB2O43679 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
LDB2O43679 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.22■□□□□ 0.35
LDB2O43679 AC021087.4-201ENST00000563761 564 ntBASIC17.22■□□□□ 0.35
LDB2O43679 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LDB2O43679 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.22■□□□□ 0.35
LDB2O43679 AL589182.2-201ENST00000619332 1049 ntBASIC17.22■□□□□ 0.35
LDB2O43679 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.22■□□□□ 0.35
LDB2O43679 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.21■□□□□ 0.35
LDB2O43679 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LDB2O43679 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
LDB2O43679 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
LDB2O43679 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.21■□□□□ 0.35
LDB2O43679 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.21■□□□□ 0.35
LDB2O43679 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 EMBP1-201ENST00000458200 901 ntBASIC17.21■□□□□ 0.35
LDB2O43679 SCARNA2-201ENST00000458748 420 ntBASIC17.21■□□□□ 0.35
LDB2O43679 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.21■□□□□ 0.35
LDB2O43679 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.21■□□□□ 0.35
LDB2O43679 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.21■□□□□ 0.35
LDB2O43679 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
LDB2O43679 AC025062.2-201ENST00000605477 670 ntBASIC17.21■□□□□ 0.35
LDB2O43679 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.21■□□□□ 0.35
LDB2O43679 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.21■□□□□ 0.35
LDB2O43679 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 AC105020.1-201ENST00000435356 2205 ntBASIC17.21■□□□□ 0.35
LDB2O43679 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
LDB2O43679 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.21■□□□□ 0.35
LDB2O43679 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
LDB2O43679 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LDB2O43679 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LDB2O43679 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LDB2O43679 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
LDB2O43679 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
LDB2O43679 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
LDB2O43679 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB2O43679 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB2O43679 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.2■□□□□ 0.34
LDB2O43679 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.2■□□□□ 0.34
LDB2O43679 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.2■□□□□ 0.34
LDB2O43679 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LDB2O43679 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB2O43679 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LDB2O43679 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB2O43679 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB2O43679 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDB2O43679 AC005915.1-201ENST00000624912 2018 ntBASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms