Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 GAMT-205ENST00000640762 751 ntTSL 5 BASIC13.94□□□□□ -0.18
HMGB3O15347 AC133041.1-202ENST00000642053 222 ntBASIC13.94□□□□□ -0.18
HMGB3O15347 AL031985.4-201ENST00000642138 673 ntBASIC13.94□□□□□ -0.18
HMGB3O15347 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.94□□□□□ -0.18
HMGB3O15347 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC13.94□□□□□ -0.18
HMGB3O15347 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC13.94□□□□□ -0.18
HMGB3O15347 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC13.94□□□□□ -0.18
HMGB3O15347 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC13.94□□□□□ -0.18
HMGB3O15347 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC13.94□□□□□ -0.18
HMGB3O15347 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC13.94□□□□□ -0.18
HMGB3O15347 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HMGB3O15347 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
HMGB3O15347 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC13.93□□□□□ -0.18
HMGB3O15347 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
HMGB3O15347 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
HMGB3O15347 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC13.93□□□□□ -0.18
HMGB3O15347 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
HMGB3O15347 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 PCDHB17P-201ENST00000539533 2393 ntBASIC13.93□□□□□ -0.18
HMGB3O15347 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
HMGB3O15347 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC13.93□□□□□ -0.18
HMGB3O15347 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
HMGB3O15347 KRT18P23-201ENST00000435622 1283 ntBASIC13.93□□□□□ -0.18
HMGB3O15347 AC069152.1-201ENST00000438030 544 ntBASIC13.93□□□□□ -0.18
HMGB3O15347 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC13.93□□□□□ -0.18
HMGB3O15347 DUTP2-201ENST00000519164 463 ntBASIC13.93□□□□□ -0.18
HMGB3O15347 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC13.93□□□□□ -0.18
HMGB3O15347 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 PAUPAR-201ENST00000630360 2965 ntBASIC13.93□□□□□ -0.18
HMGB3O15347 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC13.93□□□□□ -0.18
HMGB3O15347 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC13.93□□□□□ -0.18
HMGB3O15347 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC13.93□□□□□ -0.18
HMGB3O15347 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
HMGB3O15347 ST3GAL2-202ENST00000393640 8872 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC13.93□□□□□ -0.18
HMGB3O15347 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC13.93□□□□□ -0.18
HMGB3O15347 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
HMGB3O15347 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
HMGB3O15347 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HMGB3O15347 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.92□□□□□ -0.18
HMGB3O15347 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC13.92□□□□□ -0.18
HMGB3O15347 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
HMGB3O15347 AC009949.1-201ENST00000623048 1830 ntBASIC13.92□□□□□ -0.18
HMGB3O15347 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HMGB3O15347 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
HMGB3O15347 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
HMGB3O15347 ASL-204ENST00000395331 1538 ntTSL 5 BASIC13.92□□□□□ -0.18
HMGB3O15347 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HMGB3O15347 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC13.92□□□□□ -0.18
HMGB3O15347 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.92□□□□□ -0.18
HMGB3O15347 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HMGB3O15347 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
HMGB3O15347 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.92□□□□□ -0.18
HMGB3O15347 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.92□□□□□ -0.18
HMGB3O15347 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC13.92□□□□□ -0.18
HMGB3O15347 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HMGB3O15347 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms