Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS9D1Q9Y2B5 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 ACTG1P4-201ENST00000425123 1122 ntBASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 NUS1P1-201ENST00000446295 882 ntBASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 AC073592.4-201ENST00000623827 446 ntBASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS9D1Q9Y2B5 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 MIR3652-201ENST00000579335 131 ntBASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 MIR3908-201ENST00000579798 126 ntBASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.18■□□□□ 0.34
VPS9D1Q9Y2B5 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 AC138894.3-201ENST00000603787 634 ntBASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VPS9D1Q9Y2B5 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms