Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.52■□□□□ 0.72
CCNA1P78396 AC087289.5-201ENST00000586076 3175 ntBASIC19.52■□□□□ 0.72
CCNA1P78396 TUBB3P1-201ENST00000405796 1332 ntBASIC19.52■□□□□ 0.72
CCNA1P78396 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCNA1P78396 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CCNA1P78396 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CCNA1P78396 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.52■□□□□ 0.72
CCNA1P78396 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.52■□□□□ 0.72
CCNA1P78396 AC012569.1-201ENST00000591191 1524 ntBASIC19.52■□□□□ 0.72
CCNA1P78396 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCNA1P78396 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCNA1P78396 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCNA1P78396 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.52■□□□□ 0.72
CCNA1P78396 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCNA1P78396 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCNA1P78396 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CCNA1P78396 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCNA1P78396 AC055876.3-201ENST00000431496 288 ntBASIC19.52■□□□□ 0.72
CCNA1P78396 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.52■□□□□ 0.72
CCNA1P78396 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.52■□□□□ 0.72
CCNA1P78396 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC19.52■□□□□ 0.72
CCNA1P78396 KRT8P23-201ENST00000560090 1207 ntBASIC19.52■□□□□ 0.72
CCNA1P78396 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.52■□□□□ 0.72
CCNA1P78396 AC138649.4-201ENST00000612222 287 ntBASIC19.52■□□□□ 0.72
CCNA1P78396 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCNA1P78396 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCNA1P78396 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCNA1P78396 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.52■□□□□ 0.72
CCNA1P78396 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCNA1P78396 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCNA1P78396 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCNA1P78396 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCNA1P78396 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CCNA1P78396 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CCNA1P78396 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.51■□□□□ 0.71
CCNA1P78396 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
CCNA1P78396 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.51■□□□□ 0.71
CCNA1P78396 FAM58DP-201ENST00000428076 619 ntBASIC19.51■□□□□ 0.71
CCNA1P78396 RBPMS2P1-201ENST00000437762 623 ntBASIC19.51■□□□□ 0.71
CCNA1P78396 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CCNA1P78396 KLF2P3-201ENST00000451977 1087 ntBASIC19.51■□□□□ 0.71
CCNA1P78396 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.51■□□□□ 0.71
CCNA1P78396 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.51■□□□□ 0.71
CCNA1P78396 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.51■□□□□ 0.71
CCNA1P78396 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.51■□□□□ 0.71
CCNA1P78396 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.51■□□□□ 0.71
CCNA1P78396 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CCNA1P78396 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.51■□□□□ 0.71
CCNA1P78396 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCNA1P78396 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.5■□□□□ 0.71
CCNA1P78396 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 VMA21-202ENST00000370361 693 ntTSL 5 BASIC19.5■□□□□ 0.71
CCNA1P78396 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.5■□□□□ 0.71
CCNA1P78396 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 SPCS2P4-201ENST00000436160 681 ntBASIC19.5■□□□□ 0.71
CCNA1P78396 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.5■□□□□ 0.71
CCNA1P78396 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC19.5■□□□□ 0.71
CCNA1P78396 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.5■□□□□ 0.71
CCNA1P78396 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.5■□□□□ 0.71
CCNA1P78396 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.5■□□□□ 0.71
CCNA1P78396 AL009183.1-201ENST00000603760 355 ntBASIC19.5■□□□□ 0.71
CCNA1P78396 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.5■□□□□ 0.71
CCNA1P78396 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.5■□□□□ 0.71
CCNA1P78396 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.5■□□□□ 0.71
CCNA1P78396 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.5■□□□□ 0.71
CCNA1P78396 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCNA1P78396 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CCNA1P78396 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CCNA1P78396 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCNA1P78396 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.49■□□□□ 0.71
CCNA1P78396 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
CCNA1P78396 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCNA1P78396 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCNA1P78396 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
CCNA1P78396 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms