Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.98■□□□□ 0.47
EPHB3P54753 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
EPHB3P54753 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
EPHB3P54753 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
EPHB3P54753 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.98■□□□□ 0.47
EPHB3P54753 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
EPHB3P54753 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
EPHB3P54753 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
EPHB3P54753 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.97■□□□□ 0.47
EPHB3P54753 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
EPHB3P54753 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.97■□□□□ 0.47
EPHB3P54753 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.97■□□□□ 0.47
EPHB3P54753 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.97■□□□□ 0.47
EPHB3P54753 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
EPHB3P54753 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.97■□□□□ 0.47
EPHB3P54753 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.97■□□□□ 0.47
EPHB3P54753 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
EPHB3P54753 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.97■□□□□ 0.47
EPHB3P54753 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.97■□□□□ 0.47
EPHB3P54753 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.97■□□□□ 0.47
EPHB3P54753 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
EPHB3P54753 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
EPHB3P54753 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
EPHB3P54753 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
EPHB3P54753 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
EPHB3P54753 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.97■□□□□ 0.47
EPHB3P54753 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
EPHB3P54753 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
EPHB3P54753 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.96■□□□□ 0.47
EPHB3P54753 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
EPHB3P54753 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
EPHB3P54753 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.96■□□□□ 0.47
EPHB3P54753 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.96■□□□□ 0.47
EPHB3P54753 AC112191.1-201ENST00000523689 701 ntBASIC17.96■□□□□ 0.47
EPHB3P54753 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
EPHB3P54753 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.96■□□□□ 0.47
EPHB3P54753 AC092902.6-201ENST00000641783 218 ntBASIC17.96■□□□□ 0.47
EPHB3P54753 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.96■□□□□ 0.47
EPHB3P54753 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
EPHB3P54753 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
EPHB3P54753 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
EPHB3P54753 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.96■□□□□ 0.46
EPHB3P54753 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
EPHB3P54753 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.95■□□□□ 0.46
EPHB3P54753 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
EPHB3P54753 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
EPHB3P54753 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.95■□□□□ 0.46
EPHB3P54753 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
EPHB3P54753 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
EPHB3P54753 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 AP000344.2-201ENST00000512987 629 ntBASIC17.95■□□□□ 0.46
EPHB3P54753 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 AP002472.1-201ENST00000577490 586 ntBASIC17.95■□□□□ 0.46
EPHB3P54753 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.95■□□□□ 0.46
EPHB3P54753 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.95■□□□□ 0.46
EPHB3P54753 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.95■□□□□ 0.46
EPHB3P54753 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
EPHB3P54753 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
EPHB3P54753 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.95■□□□□ 0.46
EPHB3P54753 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
EPHB3P54753 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
EPHB3P54753 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.95■□□□□ 0.46
EPHB3P54753 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.94■□□□□ 0.46
EPHB3P54753 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms