Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC21.46■■□□□ 1.03
COL5A3P25940 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
COL5A3P25940 WASH4P-201ENST00000564273 1246 ntBASIC21.46■■□□□ 1.03
COL5A3P25940 RARRES2P9-201ENST00000565168 469 ntBASIC21.46■■□□□ 1.03
COL5A3P25940 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
COL5A3P25940 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
COL5A3P25940 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL5A3P25940 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC21.46■■□□□ 1.03
COL5A3P25940 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL5A3P25940 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL5A3P25940 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.46■■□□□ 1.03
COL5A3P25940 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL5A3P25940 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.46■■□□□ 1.03
COL5A3P25940 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
COL5A3P25940 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC21.46■■□□□ 1.03
COL5A3P25940 AL080243.2-201ENST00000418783 582 ntBASIC21.46■■□□□ 1.03
COL5A3P25940 CDK2AP2P3-201ENST00000422476 372 ntBASIC21.46■■□□□ 1.03
COL5A3P25940 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC21.46■■□□□ 1.03
COL5A3P25940 AL596325.1-201ENST00000563991 1082 ntBASIC21.46■■□□□ 1.03
COL5A3P25940 AL138918.1-201ENST00000568306 659 ntBASIC21.46■■□□□ 1.03
COL5A3P25940 AL132655.2-201ENST00000596276 594 ntBASIC21.46■■□□□ 1.03
COL5A3P25940 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
COL5A3P25940 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL5A3P25940 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
COL5A3P25940 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.45■■□□□ 1.03
COL5A3P25940 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
COL5A3P25940 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC21.45■■□□□ 1.02
COL5A3P25940 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL5A3P25940 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL5A3P25940 SPTLC1P1-201ENST00000447199 261 ntBASIC21.45■■□□□ 1.02
COL5A3P25940 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC21.45■■□□□ 1.02
COL5A3P25940 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC21.45■■□□□ 1.02
COL5A3P25940 CYP2A7P1-201ENST00000595391 815 ntBASIC21.45■■□□□ 1.02
COL5A3P25940 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL5A3P25940 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
COL5A3P25940 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL5A3P25940 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
COL5A3P25940 AC133963.1-201ENST00000504166 1679 ntBASIC21.45■■□□□ 1.02
COL5A3P25940 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.45■■□□□ 1.02
COL5A3P25940 AP3S2-216ENST00000617003 1561 ntBASIC21.44■■□□□ 1.02
COL5A3P25940 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.44■■□□□ 1.02
COL5A3P25940 FAM220BP-201ENST00000377689 816 ntBASIC21.44■■□□□ 1.02
COL5A3P25940 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC21.44■■□□□ 1.02
COL5A3P25940 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC21.44■■□□□ 1.02
COL5A3P25940 AC027369.6-201ENST00000525520 931 ntBASIC21.44■■□□□ 1.02
COL5A3P25940 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC21.44■■□□□ 1.02
COL5A3P25940 WT1-AS_2.1-201ENST00000613208 137 ntBASIC21.44■■□□□ 1.02
COL5A3P25940 TEX28P1-201ENST00000613479 1221 ntBASIC21.44■■□□□ 1.02
COL5A3P25940 TEX28P2-201ENST00000617764 1221 ntBASIC21.44■■□□□ 1.02
COL5A3P25940 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
COL5A3P25940 IGHV3-72-202ENST00000621503 303 ntBASIC21.44■■□□□ 1.02
COL5A3P25940 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21.44■■□□□ 1.02
COL5A3P25940 BICD1-207ENST00000551848 1962 ntBASIC21.44■■□□□ 1.02
COL5A3P25940 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC21.44■■□□□ 1.02
COL5A3P25940 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC21.44■■□□□ 1.02
COL5A3P25940 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.44■■□□□ 1.02
COL5A3P25940 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC21.44■■□□□ 1.02
COL5A3P25940 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A3P25940 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC21.43■■□□□ 1.02
COL5A3P25940 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC21.43■■□□□ 1.02
COL5A3P25940 GK-202ENST00000378941 458 ntTSL 3 BASIC21.43■■□□□ 1.02
COL5A3P25940 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC21.43■■□□□ 1.02
COL5A3P25940 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC21.43■■□□□ 1.02
COL5A3P25940 PRYP6-201ENST00000514804 343 ntBASIC21.43■■□□□ 1.02
COL5A3P25940 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC21.43■■□□□ 1.02
COL5A3P25940 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC21.43■■□□□ 1.02
COL5A3P25940 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.43■■□□□ 1.02
COL5A3P25940 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC21.43■■□□□ 1.02
COL5A3P25940 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC21.43■■□□□ 1.02
COL5A3P25940 ABALON-201ENST00000629058 1903 ntBASIC21.43■■□□□ 1.02
COL5A3P25940 TOP3BP1-201ENST00000420768 1380 ntBASIC21.43■■□□□ 1.02
COL5A3P25940 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21.43■■□□□ 1.02
COL5A3P25940 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A3P25940 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A3P25940 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A3P25940 LINC00896-202ENST00000609602 2128 ntBASIC21.43■■□□□ 1.02
COL5A3P25940 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A3P25940 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A3P25940 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A3P25940 PIN1P1-201ENST00000412108 996 ntBASIC21.43■■□□□ 1.02
COL5A3P25940 STARD13-205ENST00000439831 945 ntTSL 2 BASIC21.43■■□□□ 1.02
COL5A3P25940 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC21.43■■□□□ 1.02
COL5A3P25940 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC21.43■■□□□ 1.02
COL5A3P25940 AL662799.1-202ENST00000614205 422 ntBASIC21.43■■□□□ 1.02
COL5A3P25940 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC21.43■■□□□ 1.02
COL5A3P25940 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
COL5A3P25940 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A3P25940 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms