Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
RAPGEF3O95398 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC25.54■■□□□ 1.68
RAPGEF3O95398 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC25.54■■□□□ 1.68
RAPGEF3O95398 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC25.53■■□□□ 1.68
RAPGEF3O95398 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC25.53■■□□□ 1.68
RAPGEF3O95398 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC25.53■■□□□ 1.68
RAPGEF3O95398 FOXO1B-201ENST00000504678 1527 ntBASIC25.53■■□□□ 1.68
RAPGEF3O95398 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RAPGEF3O95398 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RAPGEF3O95398 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RAPGEF3O95398 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RAPGEF3O95398 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RAPGEF3O95398 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC25.53■■□□□ 1.68
RAPGEF3O95398 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RAPGEF3O95398 AC135586.1-201ENST00000539323 574 ntBASIC25.53■■□□□ 1.68
RAPGEF3O95398 AL512343.1-201ENST00000605837 169 ntBASIC25.53■■□□□ 1.68
RAPGEF3O95398 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC25.53■■□□□ 1.68
RAPGEF3O95398 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
RAPGEF3O95398 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC25.53■■□□□ 1.68
RAPGEF3O95398 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC25.53■■□□□ 1.68
RAPGEF3O95398 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RAPGEF3O95398 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC25.53■■□□□ 1.68
RAPGEF3O95398 REXO1L9P-201ENST00000604264 2108 ntBASIC25.52■■□□□ 1.68
RAPGEF3O95398 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RAPGEF3O95398 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RAPGEF3O95398 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
RAPGEF3O95398 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
RAPGEF3O95398 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 HCG4-201ENST00000418983 998 ntBASIC25.52■■□□□ 1.68
RAPGEF3O95398 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 GLI4-203ENST00000517468 963 ntTSL 5 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
RAPGEF3O95398 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RAPGEF3O95398 WT1-AS_2.1-201ENST00000613208 137 ntBASIC25.52■■□□□ 1.68
RAPGEF3O95398 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
RAPGEF3O95398 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RAPGEF3O95398 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
RAPGEF3O95398 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RAPGEF3O95398 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RAPGEF3O95398 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
RAPGEF3O95398 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
RAPGEF3O95398 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC25.51■■□□□ 1.67
RAPGEF3O95398 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC25.51■■□□□ 1.67
RAPGEF3O95398 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
RAPGEF3O95398 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
RAPGEF3O95398 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
RAPGEF3O95398 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
RAPGEF3O95398 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC25.51■■□□□ 1.67
RAPGEF3O95398 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
RAPGEF3O95398 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC25.51■■□□□ 1.67
RAPGEF3O95398 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC25.51■■□□□ 1.67
RAPGEF3O95398 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC25.51■■□□□ 1.67
RAPGEF3O95398 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
RAPGEF3O95398 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
RAPGEF3O95398 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC25.51■■□□□ 1.67
RAPGEF3O95398 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
RAPGEF3O95398 CROCCP3-202ENST00000420820 1947 ntBASIC25.51■■□□□ 1.67
RAPGEF3O95398 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC25.51■■□□□ 1.67
RAPGEF3O95398 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
RAPGEF3O95398 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
RAPGEF3O95398 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
RAPGEF3O95398 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC25.5■■□□□ 1.67
RAPGEF3O95398 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC25.5■■□□□ 1.67
RAPGEF3O95398 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
RAPGEF3O95398 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
RAPGEF3O95398 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC25.5■■□□□ 1.67
RAPGEF3O95398 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
RAPGEF3O95398 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC25.5■■□□□ 1.67
RAPGEF3O95398 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC25.5■■□□□ 1.67
RAPGEF3O95398 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
RAPGEF3O95398 AC011495.1-201ENST00000498085 584 ntBASIC25.5■■□□□ 1.67
RAPGEF3O95398 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
RAPGEF3O95398 AC105233.2-201ENST00000523697 349 ntBASIC25.5■■□□□ 1.67
RAPGEF3O95398 AF228730.5-201ENST00000530288 346 ntBASIC25.5■■□□□ 1.67
RAPGEF3O95398 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
RAPGEF3O95398 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
RAPGEF3O95398 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
RAPGEF3O95398 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC25.49■■□□□ 1.67
RAPGEF3O95398 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
RAPGEF3O95398 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
RAPGEF3O95398 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC25.49■■□□□ 1.67
RAPGEF3O95398 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC25.49■■□□□ 1.67
RAPGEF3O95398 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
RAPGEF3O95398 RN7SL837P-201ENST00000463010 287 ntBASIC25.49■■□□□ 1.67
RAPGEF3O95398 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
RAPGEF3O95398 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC25.49■■□□□ 1.67
RAPGEF3O95398 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
RAPGEF3O95398 AC073389.1-201ENST00000595595 795 ntBASIC25.49■■□□□ 1.67
RAPGEF3O95398 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
RAPGEF3O95398 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC25.49■■□□□ 1.67
RAPGEF3O95398 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms