Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.52■□□□□ 0.4
CHFRQ96EP1 AC023141.5-201ENST00000458585 616 ntBASIC17.52■□□□□ 0.4
CHFRQ96EP1 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.52■□□□□ 0.4
CHFRQ96EP1 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.52■□□□□ 0.4
CHFRQ96EP1 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CHFRQ96EP1 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
CHFRQ96EP1 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHFRQ96EP1 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.52■□□□□ 0.4
CHFRQ96EP1 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHFRQ96EP1 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.52■□□□□ 0.4
CHFRQ96EP1 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHFRQ96EP1 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHFRQ96EP1 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHFRQ96EP1 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.52■□□□□ 0.39
CHFRQ96EP1 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHFRQ96EP1 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHFRQ96EP1 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHFRQ96EP1 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHFRQ96EP1 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHFRQ96EP1 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHFRQ96EP1 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHFRQ96EP1 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHFRQ96EP1 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHFRQ96EP1 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHFRQ96EP1 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHFRQ96EP1 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHFRQ96EP1 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHFRQ96EP1 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 AL355306.1-201ENST00000415580 579 ntBASIC17.51■□□□□ 0.39
CHFRQ96EP1 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHFRQ96EP1 BCRP1-201ENST00000444246 691 ntBASIC17.51■□□□□ 0.39
CHFRQ96EP1 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 KRT8P48-201ENST00000515599 1220 ntBASIC17.51■□□□□ 0.39
CHFRQ96EP1 AC112191.1-201ENST00000523689 701 ntBASIC17.51■□□□□ 0.39
CHFRQ96EP1 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 AC005498.2-205ENST00000593218 784 ntBASIC17.51■□□□□ 0.39
CHFRQ96EP1 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 BICD1-207ENST00000551848 1962 ntBASIC17.51■□□□□ 0.39
CHFRQ96EP1 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHFRQ96EP1 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.51■□□□□ 0.39
CHFRQ96EP1 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 AC129492.6-201ENST00000611383 1305 ntBASIC17.5■□□□□ 0.39
CHFRQ96EP1 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 AC092364.2-202ENST00000597012 1073 ntBASIC17.5■□□□□ 0.39
CHFRQ96EP1 AL390955.2-201ENST00000603032 514 ntBASIC17.5■□□□□ 0.39
CHFRQ96EP1 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.5■□□□□ 0.39
CHFRQ96EP1 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CHFRQ96EP1 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHFRQ96EP1 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CHFRQ96EP1 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHFRQ96EP1 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms