Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 ELK2BP-201ENST00000415014 1224 ntBASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 KRT18P67-201ENST00000432816 1264 ntBASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 RPS2P1-201ENST00000434010 821 ntBASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 AC124947.2-201ENST00000547118 1133 ntBASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 LINC01711-201ENST00000598340 967 ntBASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 AC092053.1-201ENST00000605787 1936 ntBASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 HNRNPDP1-201ENST00000439535 754 ntBASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 SCARNA2-201ENST00000458748 420 ntBASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 AC027796.2-201ENST00000575326 344 ntBASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 AC055717.3-201ENST00000622967 595 ntBASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 AP000867.4-201ENST00000641616 219 ntBASIC17.59■□□□□ 0.41
SHROOM3Q8TF72 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHROOM3Q8TF72 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHROOM3Q8TF72 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
SHROOM3Q8TF72 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHROOM3Q8TF72 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SHROOM3Q8TF72 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.58■□□□□ 0.41
SHROOM3Q8TF72 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.58■□□□□ 0.41
SHROOM3Q8TF72 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHROOM3Q8TF72 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHROOM3Q8TF72 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.58■□□□□ 0.41
SHROOM3Q8TF72 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHROOM3Q8TF72 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHROOM3Q8TF72 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.57■□□□□ 0.4
SHROOM3Q8TF72 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms