Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 IGLL3P-201ENST00000412472 434 ntBASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 LETM1P2-201ENST00000597330 2178 ntBASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 AL513190.1-201ENST00000621254 727 ntBASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HDDC3Q8N4P3 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.33■□□□□ 0.37
HDDC3Q8N4P3 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
HDDC3Q8N4P3 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
HDDC3Q8N4P3 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HDDC3Q8N4P3 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HDDC3Q8N4P3 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
HDDC3Q8N4P3 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.33■□□□□ 0.37
HDDC3Q8N4P3 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.33■□□□□ 0.37
HDDC3Q8N4P3 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 AL078644.1-201ENST00000609881 752 ntBASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 ELL2P1-201ENST00000413990 1906 ntBASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HDDC3Q8N4P3 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 AC006116.8-202ENST00000587620 1550 ntBASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 OR7E47P-204ENST00000575924 449 ntBASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 LINC00304-203ENST00000565008 1864 ntBASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDDC3Q8N4P3 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.31■□□□□ 0.36
HDDC3Q8N4P3 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms