Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.78■□□□□ 0.6
VPS52Q8N1B4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VPS52Q8N1B4 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS52Q8N1B4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS52Q8N1B4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS52Q8N1B4 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS52Q8N1B4 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VPS52Q8N1B4 AC008764.6-201ENST00000595909 2069 ntBASIC18.78■□□□□ 0.6
VPS52Q8N1B4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS52Q8N1B4 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS52Q8N1B4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS52Q8N1B4 AC148477.5-201ENST00000625164 1645 ntBASIC18.78■□□□□ 0.6
VPS52Q8N1B4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS52Q8N1B4 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS52Q8N1B4 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
VPS52Q8N1B4 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS52Q8N1B4 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
VPS52Q8N1B4 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 AC067852.2-201ENST00000590513 2313 ntBASIC18.76■□□□□ 0.59
VPS52Q8N1B4 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 CRYGEP-201ENST00000412192 528 ntBASIC18.76■□□□□ 0.59
VPS52Q8N1B4 KLF4P1-201ENST00000412782 1185 ntBASIC18.76■□□□□ 0.59
VPS52Q8N1B4 AC211486.1-202ENST00000416371 468 ntBASIC18.76■□□□□ 0.59
VPS52Q8N1B4 DNAJB3-202ENST00000449667 1266 ntBASIC18.76■□□□□ 0.59
VPS52Q8N1B4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 AC211476.1-201ENST00000503899 468 ntBASIC18.76■□□□□ 0.59
VPS52Q8N1B4 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS52Q8N1B4 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 AC012313.1-201ENST00000593393 3059 ntBASIC18.75■□□□□ 0.59
VPS52Q8N1B4 AL096828.2-201ENST00000567259 1965 ntBASIC18.75■□□□□ 0.59
VPS52Q8N1B4 NCF1C-201ENST00000438382 1427 ntBASIC18.75■□□□□ 0.59
VPS52Q8N1B4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.75■□□□□ 0.59
VPS52Q8N1B4 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 MCCD1P2-201ENST00000423228 335 ntBASIC18.75■□□□□ 0.59
VPS52Q8N1B4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 AC027796.2-201ENST00000575326 344 ntBASIC18.75■□□□□ 0.59
VPS52Q8N1B4 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
VPS52Q8N1B4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS52Q8N1B4 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS52Q8N1B4 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS52Q8N1B4 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS52Q8N1B4 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
VPS52Q8N1B4 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS52Q8N1B4 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS52Q8N1B4 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS52Q8N1B4 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS52Q8N1B4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS52Q8N1B4 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms