Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 PPP1R14BP3-201ENST00000509033 445 ntBASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 MIR4758-201ENST00000577688 71 ntBASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 PFKL-212ENST00000628044 129 ntTSL 3 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 AC007326.2-201ENST00000624224 7579 ntBASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 METTL15-202ENST00000403099 795 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 AL050303.2-201ENST00000619798 666 ntBASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28AQ8IWP9 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 MIPEPP3-201ENST00000412105 444 ntBASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 AC073210.2-201ENST00000430369 194 ntBASIC14.47□□□□□ -0.09
CCDC28AQ8IWP9 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 432.6 ms