Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 PPT1-215ENST00000641471 2368 ntBASIC10.76□□□□□ -0.69
LINC00643Q86TS7 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 LINC02012-201ENST00000608206 1725 ntBASIC10.76□□□□□ -0.69
LINC00643Q86TS7 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 AC005840.4-201ENST00000541242 2494 ntBASIC10.76□□□□□ -0.69
LINC00643Q86TS7 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 NAA20-201ENST00000310450 920 ntTSL 2 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 VMO1-204ENST00000441199 741 ntTSL 2 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 ABR-205ENST00000544583 5595 ntTSL 2 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 LINC01101-201ENST00000622953 1884 ntBASIC10.76□□□□□ -0.69
LINC00643Q86TS7 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC00643Q86TS7 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 CICP24-201ENST00000605464 2705 ntBASIC10.75□□□□□ -0.69
LINC00643Q86TS7 GCK-202ENST00000345378 2421 ntTSL 2 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 AC107918.4-201ENST00000641966 3141 ntBASIC10.75□□□□□ -0.69
LINC00643Q86TS7 CICP20-201ENST00000443330 2801 ntBASIC10.75□□□□□ -0.69
LINC00643Q86TS7 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 HES6-206ENST00000409574 738 ntTSL 2 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC10.75□□□□□ -0.69
LINC00643Q86TS7 AC092028.1-203ENST00000608262 953 ntBASIC10.75□□□□□ -0.69
LINC00643Q86TS7 PVT1_1.1-201ENST00000615125 194 ntBASIC10.75□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms