Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 SPDYE21P-201ENST00000413323 827 ntBASIC20.67■□□□□ 0.9
RNF20Q5VTR2 HCG4P8-203ENST00000443049 980 ntBASIC20.67■□□□□ 0.9
RNF20Q5VTR2 NUS1P1-201ENST00000446295 882 ntBASIC20.67■□□□□ 0.9
RNF20Q5VTR2 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 MIR3652-201ENST00000579335 131 ntBASIC20.67■□□□□ 0.9
RNF20Q5VTR2 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 AD000864.1-201ENST00000624076 2295 ntBASIC20.67■□□□□ 0.9
RNF20Q5VTR2 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 SIGLEC16-201ENST00000599858 1437 ntBASIC20.66■□□□□ 0.9
RNF20Q5VTR2 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 EGFEM1P-202ENST00000431685 1563 ntBASIC20.66■□□□□ 0.9
RNF20Q5VTR2 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
RNF20Q5VTR2 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 FOSL1P1-201ENST00000511041 816 ntBASIC20.65■□□□□ 0.9
RNF20Q5VTR2 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
RNF20Q5VTR2 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
RNF20Q5VTR2 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
RNF20Q5VTR2 AC022211.2-201ENST00000585075 2527 ntBASIC20.64■□□□□ 0.9
RNF20Q5VTR2 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF20Q5VTR2 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.64■□□□□ 0.89
RNF20Q5VTR2 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
RNF20Q5VTR2 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF20Q5VTR2 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.64■□□□□ 0.89
RNF20Q5VTR2 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF20Q5VTR2 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF20Q5VTR2 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.64■□□□□ 0.89
RNF20Q5VTR2 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.64■□□□□ 0.89
RNF20Q5VTR2 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.64■□□□□ 0.89
RNF20Q5VTR2 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.64■□□□□ 0.89
RNF20Q5VTR2 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RNF20Q5VTR2 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms