Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 HILS1-202ENST00000545329 423 ntBASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 CD7-202ENST00000578509 925 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 AC135050.7-201ENST00000624508 2218 ntBASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 AL132655.2-201ENST00000596276 594 ntBASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 CALY-202ENST00000368555 783 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC88AQ3V6T2 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 GATD1-206ENST00000526325 756 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 CU639417.3-201ENST00000624240 1404 ntBASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 U91328.1-201ENST00000437528 223 ntBASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 SATB1-217ENST00000493952 626 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC88AQ3V6T2 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 PIN1P1-201ENST00000412108 996 ntBASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 ACA64.2-201ENST00000459014 129 ntBASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms