Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM1Q2M3G4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 CBR1-202ENST00000399191 838 ntTSL 3 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 KRT8P48-201ENST00000515599 1220 ntBASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.05■□□□□ 0.8
SHROOM1Q2M3G4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM1Q2M3G4 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 ACTG1P14-201ENST00000446382 1122 ntBASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 RNF34-208ENST00000555076 593 ntTSL 3 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.03■□□□□ 0.8
SHROOM1Q2M3G4 AC129492.6-201ENST00000611383 1305 ntBASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
SHROOM1Q2M3G4 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms