Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 AP000347.1-202ENST00000435868 847 ntBASIC17.65■□□□□ 0.42
CDH4P55283 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.65■□□□□ 0.42
CDH4P55283 AC034105.1-201ENST00000563488 319 ntBASIC17.65■□□□□ 0.42
CDH4P55283 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.65■□□□□ 0.42
CDH4P55283 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH4P55283 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.65■□□□□ 0.42
CDH4P55283 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.65■□□□□ 0.42
CDH4P55283 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CDH4P55283 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH4P55283 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH4P55283 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH4P55283 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.65■□□□□ 0.42
CDH4P55283 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH4P55283 EGFEM1P-202ENST00000431685 1563 ntBASIC17.65■□□□□ 0.42
CDH4P55283 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH4P55283 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH4P55283 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CDH4P55283 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CDH4P55283 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.64■□□□□ 0.41
CDH4P55283 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.64■□□□□ 0.41
CDH4P55283 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CDH4P55283 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.64■□□□□ 0.41
CDH4P55283 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.64■□□□□ 0.41
CDH4P55283 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.64■□□□□ 0.41
CDH4P55283 AC108073.2-201ENST00000464002 357 ntBASIC17.64■□□□□ 0.41
CDH4P55283 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.64■□□□□ 0.41
CDH4P55283 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.64■□□□□ 0.41
CDH4P55283 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.64■□□□□ 0.41
CDH4P55283 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.64■□□□□ 0.41
CDH4P55283 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CDH4P55283 PP12613-201ENST00000424958 2230 ntBASIC17.64■□□□□ 0.41
CDH4P55283 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CDH4P55283 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDH4P55283 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CDH4P55283 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CDH4P55283 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CDH4P55283 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.63■□□□□ 0.41
CDH4P55283 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.63■□□□□ 0.41
CDH4P55283 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.63■□□□□ 0.41
CDH4P55283 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.63■□□□□ 0.41
CDH4P55283 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.63■□□□□ 0.41
CDH4P55283 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.63■□□□□ 0.41
CDH4P55283 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CDH4P55283 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.63■□□□□ 0.41
CDH4P55283 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CDH4P55283 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.63■□□□□ 0.41
CDH4P55283 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CDH4P55283 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
CDH4P55283 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.63■□□□□ 0.41
CDH4P55283 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CDH4P55283 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDH4P55283 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CDH4P55283 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDH4P55283 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CDH4P55283 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.62■□□□□ 0.41
CDH4P55283 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CDH4P55283 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDH4P55283 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.62■□□□□ 0.41
CDH4P55283 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CDH4P55283 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.62■□□□□ 0.41
CDH4P55283 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDH4P55283 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.62■□□□□ 0.41
CDH4P55283 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.62■□□□□ 0.41
CDH4P55283 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDH4P55283 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.62■□□□□ 0.41
CDH4P55283 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.62■□□□□ 0.41
CDH4P55283 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDH4P55283 PAWRP1-201ENST00000451083 565 ntBASIC17.62■□□□□ 0.41
CDH4P55283 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms