Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.84■□□□□ 0.77
HMGCS2P54868 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGCS2P54868 AC012317.2-201ENST00000623305 2251 ntBASIC19.84■□□□□ 0.77
HMGCS2P54868 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HMGCS2P54868 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGCS2P54868 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGCS2P54868 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.83■□□□□ 0.77
HMGCS2P54868 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGCS2P54868 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.83■□□□□ 0.77
HMGCS2P54868 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGCS2P54868 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGCS2P54868 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGCS2P54868 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.83■□□□□ 0.77
HMGCS2P54868 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGCS2P54868 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGCS2P54868 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGCS2P54868 HMGA1P7-201ENST00000406908 502 ntBASIC19.83■□□□□ 0.77
HMGCS2P54868 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.83■□□□□ 0.77
HMGCS2P54868 AC092474.2-201ENST00000424288 719 ntBASIC19.83■□□□□ 0.77
HMGCS2P54868 KRT18P32-201ENST00000424695 1287 ntBASIC19.83■□□□□ 0.77
HMGCS2P54868 COX20P2-201ENST00000452636 358 ntBASIC19.83■□□□□ 0.77
HMGCS2P54868 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.83■□□□□ 0.77
HMGCS2P54868 DUX4L17-201ENST00000557360 1267 ntBASIC19.83■□□□□ 0.77
HMGCS2P54868 RARRES2P8-201ENST00000566335 367 ntBASIC19.83■□□□□ 0.77
HMGCS2P54868 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGCS2P54868 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGCS2P54868 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGCS2P54868 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGCS2P54868 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.76
HMGCS2P54868 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGCS2P54868 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
HMGCS2P54868 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.83■□□□□ 0.76
HMGCS2P54868 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGCS2P54868 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
HMGCS2P54868 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.76
HMGCS2P54868 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGCS2P54868 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HMGCS2P54868 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HMGCS2P54868 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
HMGCS2P54868 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGCS2P54868 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGCS2P54868 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGCS2P54868 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGCS2P54868 AC069335.1-201ENST00000489972 472 ntBASIC19.82■□□□□ 0.76
HMGCS2P54868 AC067863.1-201ENST00000494933 530 ntBASIC19.82■□□□□ 0.76
HMGCS2P54868 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGCS2P54868 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGCS2P54868 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGCS2P54868 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.82■□□□□ 0.76
HMGCS2P54868 MIR4745-201ENST00000577608 62 ntBASIC19.82■□□□□ 0.76
HMGCS2P54868 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGCS2P54868 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGCS2P54868 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
HMGCS2P54868 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGCS2P54868 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
HMGCS2P54868 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
HMGCS2P54868 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
HMGCS2P54868 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGCS2P54868 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGCS2P54868 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
HMGCS2P54868 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGCS2P54868 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 BICD1-207ENST00000551848 1962 ntBASIC19.81■□□□□ 0.76
HMGCS2P54868 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC19.81■□□□□ 0.76
HMGCS2P54868 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 AC093214.1-201ENST00000511688 1107 ntBASIC19.81■□□□□ 0.76
HMGCS2P54868 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.81■□□□□ 0.76
HMGCS2P54868 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC19.81■□□□□ 0.76
HMGCS2P54868 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.81■□□□□ 0.76
HMGCS2P54868 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGCS2P54868 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.81■□□□□ 0.76
HMGCS2P54868 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGCS2P54868 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGCS2P54868 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGCS2P54868 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
HMGCS2P54868 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms