Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC14.41□□□□□ -0.1
HOXA1P49639 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC14.41□□□□□ -0.1
HOXA1P49639 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXA1P49639 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXA1P49639 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
HOXA1P49639 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXA1P49639 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXA1P49639 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXA1P49639 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.41□□□□□ -0.1
HOXA1P49639 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXA1P49639 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXA1P49639 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
HOXA1P49639 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HOXA1P49639 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 CICP13-201ENST00000422015 2789 ntBASIC14.4□□□□□ -0.1
HOXA1P49639 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.4□□□□□ -0.1
HOXA1P49639 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXA1P49639 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
HOXA1P49639 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXA1P49639 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 CICP4-201ENST00000447359 2812 ntBASIC14.4□□□□□ -0.1
HOXA1P49639 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
HOXA1P49639 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXA1P49639 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXA1P49639 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
HOXA1P49639 MDFI-202ENST00000373050 809 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXA1P49639 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC14.4□□□□□ -0.1
HOXA1P49639 DUTP2-201ENST00000519164 463 ntBASIC14.4□□□□□ -0.1
HOXA1P49639 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC14.4□□□□□ -0.1
HOXA1P49639 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC14.4□□□□□ -0.1
HOXA1P49639 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC14.4□□□□□ -0.1
HOXA1P49639 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC14.4□□□□□ -0.1
HOXA1P49639 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC14.4□□□□□ -0.1
HOXA1P49639 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14.4□□□□□ -0.1
HOXA1P49639 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXA1P49639 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
HOXA1P49639 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXA1P49639 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
HOXA1P49639 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 AC100803.2-201ENST00000562459 1963 ntBASIC14.4□□□□□ -0.1
HOXA1P49639 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
HOXA1P49639 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
HOXA1P49639 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA1P49639 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
HOXA1P49639 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 AC133963.1-201ENST00000504166 1679 ntBASIC14.39□□□□□ -0.11
HOXA1P49639 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXA1P49639 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HOXA1P49639 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HOXA1P49639 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXA1P49639 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HOXA1P49639 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HOXA1P49639 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA1P49639 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms