Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.3■□□□□ 0.2
RFX3P48380 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.3■□□□□ 0.2
RFX3P48380 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RFX3P48380 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RFX3P48380 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.3■□□□□ 0.2
RFX3P48380 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RFX3P48380 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFX3P48380 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RFX3P48380 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.29■□□□□ 0.2
RFX3P48380 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RFX3P48380 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.29■□□□□ 0.2
RFX3P48380 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.29■□□□□ 0.2
RFX3P48380 AC097374.2-201ENST00000618617 1306 ntBASIC16.29■□□□□ 0.2
RFX3P48380 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
RFX3P48380 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
RFX3P48380 COX5BP2-201ENST00000392354 334 ntBASIC16.29■□□□□ 0.2
RFX3P48380 FAM220CP-201ENST00000395253 831 ntBASIC16.29■□□□□ 0.2
RFX3P48380 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.29■□□□□ 0.2
RFX3P48380 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
RFX3P48380 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.29■□□□□ 0.2
RFX3P48380 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.29■□□□□ 0.2
RFX3P48380 AC009533.2-201ENST00000543664 586 ntBASIC16.29■□□□□ 0.2
RFX3P48380 AC109462.3-201ENST00000573934 613 ntBASIC16.29■□□□□ 0.2
RFX3P48380 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
RFX3P48380 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.29■□□□□ 0.2
RFX3P48380 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RFX3P48380 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.29■□□□□ 0.2
RFX3P48380 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
RFX3P48380 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
RFX3P48380 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RFX3P48380 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.29■□□□□ 0.2
RFX3P48380 CROCCP2-202ENST00000412962 2773 ntBASIC16.29■□□□□ 0.2
RFX3P48380 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.29■□□□□ 0.2
RFX3P48380 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFX3P48380 TP73-AS1-210ENST00000637775 1455 ntBASIC16.29■□□□□ 0.2
RFX3P48380 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.29■□□□□ 0.2
RFX3P48380 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.28■□□□□ 0.2
RFX3P48380 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
RFX3P48380 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.28■□□□□ 0.2
RFX3P48380 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
RFX3P48380 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
RFX3P48380 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
RFX3P48380 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.28■□□□□ 0.2
RFX3P48380 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.28■□□□□ 0.2
RFX3P48380 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.28■□□□□ 0.2
RFX3P48380 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
RFX3P48380 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.28■□□□□ 0.2
RFX3P48380 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
RFX3P48380 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
RFX3P48380 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
RFX3P48380 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
RFX3P48380 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
RFX3P48380 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX3P48380 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.28■□□□□ 0.2
RFX3P48380 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms