Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.32■□□□□ 0.2
SOX3P41225 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SOX3P41225 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX3P41225 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX3P41225 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.32■□□□□ 0.2
SOX3P41225 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.32■□□□□ 0.2
SOX3P41225 KRT8P10-201ENST00000450021 1447 ntBASIC16.32■□□□□ 0.2
SOX3P41225 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX3P41225 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SOX3P41225 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SOX3P41225 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 AL160237.2-201ENST00000556165 472 ntBASIC16.32■□□□□ 0.2
SOX3P41225 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX3P41225 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX3P41225 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.32■□□□□ 0.2
SOX3P41225 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX3P41225 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.32■□□□□ 0.2
SOX3P41225 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.32■□□□□ 0.2
SOX3P41225 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX3P41225 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.31■□□□□ 0.2
SOX3P41225 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.31■□□□□ 0.2
SOX3P41225 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.31■□□□□ 0.2
SOX3P41225 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SOX3P41225 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SOX3P41225 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.31■□□□□ 0.2
SOX3P41225 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.31■□□□□ 0.2
SOX3P41225 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 ABCD1P5-201ENST00000445663 754 ntBASIC16.31■□□□□ 0.2
SOX3P41225 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.31■□□□□ 0.2
SOX3P41225 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.31■□□□□ 0.2
SOX3P41225 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.31■□□□□ 0.2
SOX3P41225 AC009078.2-202ENST00000463353 338 ntBASIC16.31■□□□□ 0.2
SOX3P41225 AP002469.2-201ENST00000531724 424 ntBASIC16.31■□□□□ 0.2
SOX3P41225 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.31■□□□□ 0.2
SOX3P41225 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.31■□□□□ 0.2
SOX3P41225 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
SOX3P41225 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SOX3P41225 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
SOX3P41225 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.31■□□□□ 0.2
SOX3P41225 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
SOX3P41225 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX3P41225 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SOX3P41225 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX3P41225 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 AL118508.1-201ENST00000613502 2345 ntBASIC16.3■□□□□ 0.2
SOX3P41225 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX3P41225 UBALD1-205ENST00000590891 2641 ntBASIC16.3■□□□□ 0.2
SOX3P41225 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX3P41225 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.3■□□□□ 0.2
SOX3P41225 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX3P41225 RBM17P3-201ENST00000417687 1192 ntBASIC16.3■□□□□ 0.2
SOX3P41225 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 AC106795.1-205ENST00000512851 1056 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms