Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.56■□□□□ 0.24
MSX2P35548 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MSX2P35548 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
MSX2P35548 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.56■□□□□ 0.24
MSX2P35548 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MSX2P35548 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
MSX2P35548 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
MSX2P35548 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.55■□□□□ 0.24
MSX2P35548 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
MSX2P35548 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MSX2P35548 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.55■□□□□ 0.24
MSX2P35548 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.55■□□□□ 0.24
MSX2P35548 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.55■□□□□ 0.24
MSX2P35548 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
MSX2P35548 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC16.55■□□□□ 0.24
MSX2P35548 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.55■□□□□ 0.24
MSX2P35548 AC113404.2-201ENST00000507884 177 ntBASIC16.55■□□□□ 0.24
MSX2P35548 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.55■□□□□ 0.24
MSX2P35548 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.55■□□□□ 0.24
MSX2P35548 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC16.55■□□□□ 0.24
MSX2P35548 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 AC026471.5-201ENST00000615068 467 ntBASIC16.55■□□□□ 0.24
MSX2P35548 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.55■□□□□ 0.24
MSX2P35548 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.55■□□□□ 0.24
MSX2P35548 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
MSX2P35548 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.55■□□□□ 0.24
MSX2P35548 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSX2P35548 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
MSX2P35548 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX2P35548 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX2P35548 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX2P35548 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.54■□□□□ 0.24
MSX2P35548 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.54■□□□□ 0.24
MSX2P35548 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX2P35548 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.54■□□□□ 0.24
MSX2P35548 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX2P35548 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX2P35548 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSX2P35548 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.54■□□□□ 0.24
MSX2P35548 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.54■□□□□ 0.24
MSX2P35548 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.54■□□□□ 0.24
MSX2P35548 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
MSX2P35548 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.54■□□□□ 0.24
MSX2P35548 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSX2P35548 AC116562.4-202ENST00000641738 218 ntBASIC16.54■□□□□ 0.24
MSX2P35548 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX2P35548 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.54■□□□□ 0.24
MSX2P35548 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX2P35548 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX2P35548 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSX2P35548 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.54■□□□□ 0.24
MSX2P35548 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.53■□□□□ 0.24
MSX2P35548 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MSX2P35548 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.53■□□□□ 0.24
MSX2P35548 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSX2P35548 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSX2P35548 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
MSX2P35548 AC024909.3-201ENST00000611513 2257 ntBASIC16.53■□□□□ 0.24
MSX2P35548 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSX2P35548 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MSX2P35548 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSX2P35548 DBET-201ENST00000630918 3363 ntBASIC16.53■□□□□ 0.24
MSX2P35548 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
MSX2P35548 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSX2P35548 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSX2P35548 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
MSX2P35548 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.53■□□□□ 0.24
MSX2P35548 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.53■□□□□ 0.24
MSX2P35548 RBM17P1-201ENST00000453646 1190 ntBASIC16.53■□□□□ 0.24
MSX2P35548 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.53■□□□□ 0.24
MSX2P35548 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSX2P35548 AP003071.4-201ENST00000562276 1284 ntBASIC16.53■□□□□ 0.24
MSX2P35548 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSX2P35548 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.53■□□□□ 0.24
MSX2P35548 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.53■□□□□ 0.24
MSX2P35548 AL049637.2-201ENST00000641778 930 ntBASIC16.53■□□□□ 0.24
MSX2P35548 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
MSX2P35548 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSX2P35548 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms