Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDC1P18827 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDC1P18827 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.49■□□□□ 0.23
SDC1P18827 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SDC1P18827 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SDC1P18827 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.48■□□□□ 0.23
SDC1P18827 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.48■□□□□ 0.23
SDC1P18827 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SDC1P18827 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.48■□□□□ 0.23
SDC1P18827 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SDC1P18827 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
SDC1P18827 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.48■□□□□ 0.23
SDC1P18827 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.48■□□□□ 0.23
SDC1P18827 TOB2P1-201ENST00000469761 992 ntBASIC16.48■□□□□ 0.23
SDC1P18827 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.48■□□□□ 0.23
SDC1P18827 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.48■□□□□ 0.23
SDC1P18827 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SDC1P18827 AP002414.4-201ENST00000589764 1148 ntBASIC16.48■□□□□ 0.23
SDC1P18827 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.48■□□□□ 0.23
SDC1P18827 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.48■□□□□ 0.23
SDC1P18827 INTS4P1-201ENST00000438455 1935 ntBASIC16.48■□□□□ 0.23
SDC1P18827 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
SDC1P18827 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.48■□□□□ 0.23
SDC1P18827 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SDC1P18827 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SDC1P18827 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SDC1P18827 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SDC1P18827 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC1P18827 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.48■□□□□ 0.23
SDC1P18827 AC078925.2-201ENST00000624013 1973 ntBASIC16.47■□□□□ 0.23
SDC1P18827 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.47■□□□□ 0.23
SDC1P18827 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SDC1P18827 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.47■□□□□ 0.23
SDC1P18827 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 UBALD1-205ENST00000590891 2641 ntBASIC16.47■□□□□ 0.23
SDC1P18827 NSUN5P1-202ENST00000421140 1535 ntBASIC16.47■□□□□ 0.23
SDC1P18827 NSUN5P2-203ENST00000457352 1529 ntBASIC16.47■□□□□ 0.23
SDC1P18827 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.47■□□□□ 0.23
SDC1P18827 KRT17P6-201ENST00000453795 1220 ntBASIC16.47■□□□□ 0.23
SDC1P18827 MINOS1P3-201ENST00000457048 203 ntBASIC16.47■□□□□ 0.23
SDC1P18827 AC096582.2-201ENST00000510860 516 ntBASIC16.47■□□□□ 0.23
SDC1P18827 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.47■□□□□ 0.23
SDC1P18827 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
SDC1P18827 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.47■□□□□ 0.23
SDC1P18827 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
SDC1P18827 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.47■□□□□ 0.23
SDC1P18827 IER3-202ENST00000376377 1350 ntBASIC16.47■□□□□ 0.23
SDC1P18827 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.47■□□□□ 0.23
SDC1P18827 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SDC1P18827 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.46■□□□□ 0.23
SDC1P18827 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SDC1P18827 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC1P18827 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.46■□□□□ 0.23
SDC1P18827 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
SDC1P18827 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.46■□□□□ 0.23
SDC1P18827 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.46■□□□□ 0.23
SDC1P18827 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.46■□□□□ 0.23
SDC1P18827 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.46■□□□□ 0.23
SDC1P18827 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SDC1P18827 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC1P18827 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC1P18827 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SDC1P18827 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.46■□□□□ 0.23
SDC1P18827 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SDC1P18827 FAM210CP-201ENST00000445714 574 ntBASIC16.46■□□□□ 0.23
SDC1P18827 LINC00265-3P-201ENST00000447588 903 ntBASIC16.46■□□□□ 0.23
SDC1P18827 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC1P18827 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SDC1P18827 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.46■□□□□ 0.23
SDC1P18827 AC087388.1-201ENST00000571370 1112 ntBASIC16.46■□□□□ 0.23
SDC1P18827 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.46■□□□□ 0.23
SDC1P18827 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms