Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 AC239809.2-201ENST00000415381 517 ntBASIC13.06□□□□□ -0.32
HLA-DQA1P01909 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 FAM201B-201ENST00000458407 597 ntBASIC13.06□□□□□ -0.32
HLA-DQA1P01909 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 KLF2-202ENST00000592003 564 ntTSL 3 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 CYP51A1P1-201ENST00000492267 1507 ntBASIC13.06□□□□□ -0.32
HLA-DQA1P01909 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 DBET-201ENST00000630918 3363 ntBASIC13.06□□□□□ -0.32
HLA-DQA1P01909 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 KRT8P9-201ENST00000558927 1449 ntBASIC13.05□□□□□ -0.32
HLA-DQA1P01909 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 DERL1-203ENST00000419562 918 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 DDX43P3-201ENST00000441064 443 ntBASIC13.05□□□□□ -0.32
HLA-DQA1P01909 MCCD1P1-208ENST00000445732 328 ntBASIC13.05□□□□□ -0.32
HLA-DQA1P01909 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 MMAB-206ENST00000540016 945 ntTSL 3 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 MIR4651-201ENST00000582622 73 ntBASIC13.05□□□□□ -0.32
HLA-DQA1P01909 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 AC008403.3-201ENST00000598924 454 ntBASIC13.05□□□□□ -0.32
HLA-DQA1P01909 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DQA1P01909 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 VILL-207ENST00000465644 1857 ntTSL 5 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DQA1P01909 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms