Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.12■□□□□ 0.81
CDKL5O76039 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.12■□□□□ 0.81
CDKL5O76039 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.12■□□□□ 0.81
CDKL5O76039 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.12■□□□□ 0.81
CDKL5O76039 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CDKL5O76039 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.12■□□□□ 0.81
CDKL5O76039 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDKL5O76039 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
CDKL5O76039 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
CDKL5O76039 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDKL5O76039 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDKL5O76039 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.11■□□□□ 0.81
CDKL5O76039 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDKL5O76039 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDKL5O76039 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDKL5O76039 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.11■□□□□ 0.81
CDKL5O76039 TSPY19P-201ENST00000418461 509 ntBASIC20.11■□□□□ 0.81
CDKL5O76039 TSPY18P-201ENST00000441642 509 ntBASIC20.11■□□□□ 0.81
CDKL5O76039 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDKL5O76039 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.11■□□□□ 0.81
CDKL5O76039 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.11■□□□□ 0.81
CDKL5O76039 AC091304.2-201ENST00000564639 760 ntBASIC20.11■□□□□ 0.81
CDKL5O76039 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.11■□□□□ 0.81
CDKL5O76039 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.11■□□□□ 0.81
CDKL5O76039 AL732292.2-201ENST00000609649 430 ntBASIC20.11■□□□□ 0.81
CDKL5O76039 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.11■□□□□ 0.81
CDKL5O76039 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDKL5O76039 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDKL5O76039 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.11■□□□□ 0.81
CDKL5O76039 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDKL5O76039 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDKL5O76039 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDKL5O76039 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDKL5O76039 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.11■□□□□ 0.81
CDKL5O76039 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CDKL5O76039 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
CDKL5O76039 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC20.1■□□□□ 0.81
CDKL5O76039 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.1■□□□□ 0.81
CDKL5O76039 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.1■□□□□ 0.81
CDKL5O76039 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.1■□□□□ 0.81
CDKL5O76039 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.1■□□□□ 0.81
CDKL5O76039 AC124947.2-201ENST00000547118 1133 ntBASIC20.1■□□□□ 0.81
CDKL5O76039 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.1■□□□□ 0.81
CDKL5O76039 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.1■□□□□ 0.81
CDKL5O76039 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
CDKL5O76039 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CDKL5O76039 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CDKL5O76039 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CDKL5O76039 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.1■□□□□ 0.81
CDKL5O76039 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDKL5O76039 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.09■□□□□ 0.81
CDKL5O76039 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CDKL5O76039 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CDKL5O76039 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.09■□□□□ 0.81
CDKL5O76039 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CDKL5O76039 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.09■□□□□ 0.81
CDKL5O76039 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.09■□□□□ 0.81
CDKL5O76039 LINC01711-201ENST00000598340 967 ntBASIC20.09■□□□□ 0.81
CDKL5O76039 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.09■□□□□ 0.81
CDKL5O76039 AL139288.1-201ENST00000623748 933 ntBASIC20.09■□□□□ 0.81
CDKL5O76039 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.09■□□□□ 0.81
CDKL5O76039 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.09■□□□□ 0.81
CDKL5O76039 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.09■□□□□ 0.81
CDKL5O76039 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms