Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC188H7C350 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC188H7C350 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC188H7C350 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
CCDC188H7C350 PCDHB17P-201ENST00000539533 2393 ntBASIC18.02■□□□□ 0.47
CCDC188H7C350 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC188H7C350 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.02■□□□□ 0.47
CCDC188H7C350 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC188H7C350 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC188H7C350 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC188H7C350 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
CCDC188H7C350 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CCDC188H7C350 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CCDC188H7C350 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC188H7C350 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
CCDC188H7C350 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC188H7C350 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.01■□□□□ 0.47
CCDC188H7C350 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC188H7C350 TSPY15P-201ENST00000457163 923 ntBASIC18.01■□□□□ 0.47
CCDC188H7C350 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC188H7C350 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CCDC188H7C350 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.01■□□□□ 0.47
CCDC188H7C350 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC188H7C350 ZNF444P1-201ENST00000559497 298 ntBASIC18.01■□□□□ 0.47
CCDC188H7C350 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CCDC188H7C350 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC188H7C350 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC188H7C350 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 LINC01568-207ENST00000641790 1380 ntBASIC18.01■□□□□ 0.47
CCDC188H7C350 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CCDC188H7C350 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CCDC188H7C350 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC188H7C350 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC188H7C350 KRT18P22-201ENST00000402024 1347 ntBASIC18■□□□□ 0.47
CCDC188H7C350 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC188H7C350 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC188H7C350 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC188H7C350 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC188H7C350 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CCDC188H7C350 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC188H7C350 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CCDC188H7C350 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC188H7C350 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18■□□□□ 0.47
CCDC188H7C350 MIR662-201ENST00000384847 95 ntBASIC18■□□□□ 0.47
CCDC188H7C350 STARP1-201ENST00000397973 869 ntBASIC18■□□□□ 0.47
CCDC188H7C350 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC188H7C350 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC188H7C350 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18■□□□□ 0.47
CCDC188H7C350 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC188H7C350 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC188H7C350 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18■□□□□ 0.47
CCDC188H7C350 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18■□□□□ 0.47
CCDC188H7C350 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC188H7C350 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CCDC188H7C350 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18■□□□□ 0.47
CCDC188H7C350 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18■□□□□ 0.47
CCDC188H7C350 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
CCDC188H7C350 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC188H7C350 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC188H7C350 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 PCDHA1-201ENST00000378133 2726 ntBASIC17.99■□□□□ 0.47
CCDC188H7C350 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
CCDC188H7C350 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 SPDYE15P-201ENST00000424157 909 ntBASIC17.99■□□□□ 0.47
CCDC188H7C350 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC188H7C350 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCDC188H7C350 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC188H7C350 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCDC188H7C350 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC188H7C350 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms