Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HPS3Q969F9 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
HPS3Q969F9 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HPS3Q969F9 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HPS3Q969F9 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HPS3Q969F9 NKILA-202ENST00000614771 2598 ntBASIC19.19■□□□□ 0.66
HPS3Q969F9 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.19■□□□□ 0.66
HPS3Q969F9 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HPS3Q969F9 AC092068.3-201ENST00000587894 2016 ntBASIC19.19■□□□□ 0.66
HPS3Q969F9 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HPS3Q969F9 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.19■□□□□ 0.66
HPS3Q969F9 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.19■□□□□ 0.66
HPS3Q969F9 BX005266.1-201ENST00000473402 457 ntBASIC19.19■□□□□ 0.66
HPS3Q969F9 KRT18P56-201ENST00000507275 550 ntBASIC19.19■□□□□ 0.66
HPS3Q969F9 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.19■□□□□ 0.66
HPS3Q969F9 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
HPS3Q969F9 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HPS3Q969F9 AC106886.4-201ENST00000623557 2502 ntBASIC19.19■□□□□ 0.66
HPS3Q969F9 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.19■□□□□ 0.66
HPS3Q969F9 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.19■□□□□ 0.66
HPS3Q969F9 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
HPS3Q969F9 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.19■□□□□ 0.66
HPS3Q969F9 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HPS3Q969F9 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HPS3Q969F9 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.19■□□□□ 0.66
HPS3Q969F9 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HPS3Q969F9 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HPS3Q969F9 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
HPS3Q969F9 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.18■□□□□ 0.66
HPS3Q969F9 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
HPS3Q969F9 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.18■□□□□ 0.66
HPS3Q969F9 AKR1C7P-201ENST00000305623 895 ntBASIC19.18■□□□□ 0.66
HPS3Q969F9 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HPS3Q969F9 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
HPS3Q969F9 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HPS3Q969F9 UNC93B7-201ENST00000509439 705 ntBASIC19.18■□□□□ 0.66
HPS3Q969F9 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.18■□□□□ 0.66
HPS3Q969F9 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.18■□□□□ 0.66
HPS3Q969F9 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.18■□□□□ 0.66
HPS3Q969F9 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HPS3Q969F9 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HPS3Q969F9 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HPS3Q969F9 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
HPS3Q969F9 PRORSD1P-202ENST00000563365 2154 ntBASIC19.17■□□□□ 0.66
HPS3Q969F9 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HPS3Q969F9 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HPS3Q969F9 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HPS3Q969F9 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HPS3Q969F9 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HPS3Q969F9 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HPS3Q969F9 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.17■□□□□ 0.66
HPS3Q969F9 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.17■□□□□ 0.66
HPS3Q969F9 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.17■□□□□ 0.66
HPS3Q969F9 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.17■□□□□ 0.66
HPS3Q969F9 AL020989.1-201ENST00000422979 469 ntBASIC19.17■□□□□ 0.66
HPS3Q969F9 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.17■□□□□ 0.66
HPS3Q969F9 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.17■□□□□ 0.66
HPS3Q969F9 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.17■□□□□ 0.66
HPS3Q969F9 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HPS3Q969F9 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.17■□□□□ 0.66
HPS3Q969F9 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HPS3Q969F9 AC079776.2-201ENST00000641154 1609 ntBASIC19.17■□□□□ 0.66
HPS3Q969F9 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HPS3Q969F9 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HPS3Q969F9 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.17■□□□□ 0.66
HPS3Q969F9 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
HPS3Q969F9 AC005915.1-201ENST00000624912 2018 ntBASIC19.17■□□□□ 0.66
HPS3Q969F9 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HPS3Q969F9 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HPS3Q969F9 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.16■□□□□ 0.66
HPS3Q969F9 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
HPS3Q969F9 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
HPS3Q969F9 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
HPS3Q969F9 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.16■□□□□ 0.66
HPS3Q969F9 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HPS3Q969F9 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HPS3Q969F9 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HPS3Q969F9 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HPS3Q969F9 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.16■□□□□ 0.66
HPS3Q969F9 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.16■□□□□ 0.66
HPS3Q969F9 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.16■□□□□ 0.66
HPS3Q969F9 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.16■□□□□ 0.66
HPS3Q969F9 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.16■□□□□ 0.66
HPS3Q969F9 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HPS3Q969F9 AC091304.2-201ENST00000564639 760 ntBASIC19.16■□□□□ 0.66
HPS3Q969F9 AL121772.3-201ENST00000610840 674 ntBASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms