Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 TK1-204ENST00000590430 683 ntTSL 3 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 WDR6-223ENST00000627177 207 ntTSL 2 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 ANKRD20A8P-203ENST00000641373 517 ntBASIC13.24□□□□□ -0.29
HLA-DMBP28068 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 AC046185.3-201ENST00000623228 1824 ntBASIC13.24□□□□□ -0.29
HLA-DMBP28068 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 AC116353.5-201ENST00000638148 1699 ntBASIC13.24□□□□□ -0.29
HLA-DMBP28068 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 AGGF1P2-201ENST00000426656 2106 ntBASIC13.24□□□□□ -0.29
HLA-DMBP28068 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.24□□□□□ -0.29
HLA-DMBP28068 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DMBP28068 TBC1D3P5-201ENST00000579401 1545 ntBASIC13.23□□□□□ -0.29
HLA-DMBP28068 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 RHBDF1P1-201ENST00000427504 1941 ntBASIC13.23□□□□□ -0.29
HLA-DMBP28068 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HLA-DMBP28068 AMT-250ENST00000637682 1823 ntTSL 5 BASIC13.23□□□□□ -0.29
HLA-DMBP28068 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 AC092053.1-201ENST00000605787 1936 ntBASIC13.22□□□□□ -0.29
HLA-DMBP28068 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HLA-DMBP28068 FXN-203ENST00000396366 922 ntTSL 2 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC13.22□□□□□ -0.29
HLA-DMBP28068 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms