Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
TNFP01375 BCAR1-209ENST00000546196 1340 ntBASIC16.89■□□□□ 0.29
TNFP01375 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.89■□□□□ 0.29
TNFP01375 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TNFP01375 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFP01375 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFP01375 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TNFP01375 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
TNFP01375 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.88■□□□□ 0.29
TNFP01375 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
TNFP01375 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
TNFP01375 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.88■□□□□ 0.29
TNFP01375 RPS8P6-201ENST00000426177 609 ntBASIC16.88■□□□□ 0.29
TNFP01375 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.88■□□□□ 0.29
TNFP01375 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.88■□□□□ 0.29
TNFP01375 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.88■□□□□ 0.29
TNFP01375 AL513190.1-201ENST00000621254 727 ntBASIC16.88■□□□□ 0.29
TNFP01375 AC010507.1-201ENST00000633895 436 ntBASIC16.88■□□□□ 0.29
TNFP01375 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.88■□□□□ 0.29
TNFP01375 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TNFP01375 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
TNFP01375 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TNFP01375 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.88■□□□□ 0.29
TNFP01375 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.88■□□□□ 0.29
TNFP01375 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TNFP01375 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.87■□□□□ 0.29
TNFP01375 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.87■□□□□ 0.29
TNFP01375 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TNFP01375 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TNFP01375 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TNFP01375 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TNFP01375 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TNFP01375 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TNFP01375 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TNFP01375 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.87■□□□□ 0.29
TNFP01375 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TNFP01375 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.87■□□□□ 0.29
TNFP01375 RHOQP3-201ENST00000437982 621 ntBASIC16.87■□□□□ 0.29
TNFP01375 PAWRP1-201ENST00000451083 565 ntBASIC16.87■□□□□ 0.29
TNFP01375 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.87■□□□□ 0.29
TNFP01375 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.87■□□□□ 0.29
TNFP01375 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.87■□□□□ 0.29
TNFP01375 CXCL1P1-201ENST00000502804 216 ntBASIC16.87■□□□□ 0.29
TNFP01375 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.87■□□□□ 0.29
TNFP01375 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.87■□□□□ 0.29
TNFP01375 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.87■□□□□ 0.29
TNFP01375 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.87■□□□□ 0.29
TNFP01375 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.87■□□□□ 0.29
TNFP01375 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.87■□□□□ 0.29
TNFP01375 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.87■□□□□ 0.29
TNFP01375 AC023141.13-201ENST00000604991 943 ntBASIC16.87■□□□□ 0.29
TNFP01375 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
TNFP01375 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.87■□□□□ 0.29
TNFP01375 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TNFP01375 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.87■□□□□ 0.29
TNFP01375 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TNFP01375 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TNFP01375 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.87■□□□□ 0.29
TNFP01375 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.87■□□□□ 0.29
TNFP01375 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
TNFP01375 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
TNFP01375 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
TNFP01375 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.86■□□□□ 0.29
TNFP01375 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
TNFP01375 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
TNFP01375 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.86■□□□□ 0.29
TNFP01375 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.86■□□□□ 0.29
TNFP01375 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
TNFP01375 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
TNFP01375 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.86■□□□□ 0.29
TNFP01375 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.86■□□□□ 0.29
TNFP01375 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.86■□□□□ 0.29
TNFP01375 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.86■□□□□ 0.29
TNFP01375 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
TNFP01375 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms