Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
NPHP1O15259 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP1O15259 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP1O15259 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC21.8■■□□□ 1.08
NPHP1O15259 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
NPHP1O15259 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC21.8■■□□□ 1.08
NPHP1O15259 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
NPHP1O15259 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHP1O15259 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP1O15259 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
NPHP1O15259 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP1O15259 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC21.79■■□□□ 1.08
NPHP1O15259 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
NPHP1O15259 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHP1O15259 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP1O15259 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHP1O15259 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP1O15259 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP1O15259 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP1O15259 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHP1O15259 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC21.79■■□□□ 1.08
NPHP1O15259 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHP1O15259 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC21.79■■□□□ 1.08
NPHP1O15259 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHP1O15259 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP1O15259 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP1O15259 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP1O15259 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP1O15259 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP1O15259 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHP1O15259 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP1O15259 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHP1O15259 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP1O15259 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP1O15259 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP1O15259 GOLGA6L17P-202ENST00000614358 1398 ntBASIC21.78■■□□□ 1.08
NPHP1O15259 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP1O15259 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
NPHP1O15259 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP1O15259 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP1O15259 CD99-202ENST00000381180 530 ntTSL 2 BASIC21.78■■□□□ 1.08
NPHP1O15259 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC21.78■■□□□ 1.08
NPHP1O15259 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.78■■□□□ 1.08
NPHP1O15259 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC21.78■■□□□ 1.08
NPHP1O15259 LSM12-202ENST00000585388 942 ntTSL 3 BASIC21.78■■□□□ 1.08
NPHP1O15259 MED16-214ENST00000617672 554 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP1O15259 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP1O15259 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP1O15259 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP1O15259 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP1O15259 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP1O15259 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP1O15259 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP1O15259 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC21.77■■□□□ 1.08
NPHP1O15259 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP1O15259 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.77■■□□□ 1.08
NPHP1O15259 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.77■■□□□ 1.08
NPHP1O15259 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC21.77■■□□□ 1.08
NPHP1O15259 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.77■■□□□ 1.08
NPHP1O15259 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP1O15259 STOM-202ENST00000347359 870 ntTSL 2 BASIC21.77■■□□□ 1.08
NPHP1O15259 AL139400.1-201ENST00000366220 510 ntBASIC21.77■■□□□ 1.08
NPHP1O15259 CALY-203ENST00000368558 825 ntTSL 5 BASIC21.77■■□□□ 1.08
NPHP1O15259 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
NPHP1O15259 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC21.77■■□□□ 1.08
NPHP1O15259 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP1O15259 AC002558.1-201ENST00000488906 803 ntBASIC21.77■■□□□ 1.08
NPHP1O15259 DAD1-205ENST00000543337 501 ntTSL 3 BASIC21.77■■□□□ 1.08
NPHP1O15259 RNF34-208ENST00000555076 593 ntTSL 3 BASIC21.77■■□□□ 1.08
NPHP1O15259 AC025678.2-201ENST00000562061 970 ntBASIC21.77■■□□□ 1.08
NPHP1O15259 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC21.77■■□□□ 1.08
NPHP1O15259 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP1O15259 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP1O15259 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP1O15259 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
NPHP1O15259 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP1O15259 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC21.77■■□□□ 1.08
NPHP1O15259 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP1O15259 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC21.77■■□□□ 1.08
NPHP1O15259 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP1O15259 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.77■■□□□ 1.07
NPHP1O15259 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP1O15259 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP1O15259 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP1O15259 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP1O15259 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP1O15259 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC21.77■■□□□ 1.07
NPHP1O15259 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NPHP1O15259 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP1O15259 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.76■■□□□ 1.07
NPHP1O15259 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
NPHP1O15259 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHP1O15259 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
NPHP1O15259 AC004461.1-201ENST00000412461 403 ntBASIC21.76■■□□□ 1.07
NPHP1O15259 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC21.76■■□□□ 1.07
NPHP1O15259 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHP1O15259 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHP1O15259 AL513480.1-201ENST00000451731 511 ntBASIC21.76■■□□□ 1.07
NPHP1O15259 LHX6-205ENST00000464484 666 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHP1O15259 SPCS2P1-201ENST00000561636 679 ntBASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms