Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTDP1Q9Y5B0 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 ACTG1P4-201ENST00000425123 1122 ntBASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDP1Q9Y5B0 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.79
CTDP1Q9Y5B0 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CTDP1Q9Y5B0 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CTDP1Q9Y5B0 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CTDP1Q9Y5B0 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CTDP1Q9Y5B0 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CTDP1Q9Y5B0 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CTDP1Q9Y5B0 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.02■□□□□ 0.79
CTDP1Q9Y5B0 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 HCG4B-203ENST00000450128 991 ntBASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 AC004967.1-201ENST00000453589 447 ntBASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTDP1Q9Y5B0 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTDP1Q9Y5B0 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms