Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AC021087.4-201ENST00000563761 564 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AC145285.3-201ENST00000564603 959 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 LINC01711-201ENST00000598340 967 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 COPE-211ENST00000600932 1144 ntTSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AC009102.3-201ENST00000623118 1491 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AC023274.1-201ENST00000418278 595 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 CALY-203ENST00000368558 825 ntTSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 KRT18P65-201ENST00000439811 1286 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 SCARNA2-201ENST00000458748 420 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 MIR4469-201ENST00000583919 79 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AL356488.2-201ENST00000602755 427 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AP000867.4-201ENST00000641616 219 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 HLA-J-201ENST00000462773 1622 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 PMS2P2-201ENST00000425039 1128 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 RNA5SP415-201ENST00000517246 115 ntBASIC5.38□□□□□ -1.55
SYNE1Q8NF91 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
SYNE1Q8NF91 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SYNE1Q8NF91 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms