Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.14■□□□□ 0.49
HDAC4P56524 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.14■□□□□ 0.49
HDAC4P56524 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.14■□□□□ 0.49
HDAC4P56524 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
HDAC4P56524 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.14■□□□□ 0.49
HDAC4P56524 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HDAC4P56524 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
HDAC4P56524 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
HDAC4P56524 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
HDAC4P56524 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
HDAC4P56524 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
HDAC4P56524 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.14■□□□□ 0.49
HDAC4P56524 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.14■□□□□ 0.49
HDAC4P56524 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDAC4P56524 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
HDAC4P56524 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HDAC4P56524 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.13■□□□□ 0.49
HDAC4P56524 AL135999.2-201ENST00000622438 1686 ntBASIC18.13■□□□□ 0.49
HDAC4P56524 AP001094.4-201ENST00000579008 2176 ntBASIC18.13■□□□□ 0.49
HDAC4P56524 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.13■□□□□ 0.49
HDAC4P56524 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
HDAC4P56524 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
HDAC4P56524 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.13■□□□□ 0.49
HDAC4P56524 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.13■□□□□ 0.49
HDAC4P56524 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.13■□□□□ 0.49
HDAC4P56524 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 AC073592.4-201ENST00000623827 446 ntBASIC18.13■□□□□ 0.49
HDAC4P56524 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
HDAC4P56524 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.13■□□□□ 0.49
HDAC4P56524 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HDAC4P56524 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.13■□□□□ 0.49
HDAC4P56524 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HDAC4P56524 SIGLEC16-201ENST00000599858 1437 ntBASIC18.13■□□□□ 0.49
HDAC4P56524 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.13■□□□□ 0.49
HDAC4P56524 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HDAC4P56524 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 AC079776.2-201ENST00000641154 1609 ntBASIC18.12■□□□□ 0.49
HDAC4P56524 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HDAC4P56524 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
HDAC4P56524 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.12■□□□□ 0.49
HDAC4P56524 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.12■□□□□ 0.49
HDAC4P56524 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HDAC4P56524 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.12■□□□□ 0.49
HDAC4P56524 AL020989.1-201ENST00000422979 469 ntBASIC18.12■□□□□ 0.49
HDAC4P56524 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.12■□□□□ 0.49
HDAC4P56524 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.12■□□□□ 0.49
HDAC4P56524 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HDAC4P56524 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.12■□□□□ 0.49
HDAC4P56524 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.12■□□□□ 0.49
HDAC4P56524 AL139384.1-201ENST00000612143 3047 ntBASIC18.12■□□□□ 0.49
HDAC4P56524 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HDAC4P56524 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
HDAC4P56524 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.12■□□□□ 0.49
HDAC4P56524 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HDAC4P56524 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.12■□□□□ 0.49
HDAC4P56524 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.12■□□□□ 0.49
HDAC4P56524 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HDAC4P56524 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC4P56524 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.12■□□□□ 0.49
HDAC4P56524 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms