Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGCS2P54868 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGCS2P54868 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGCS2P54868 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGCS2P54868 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGCS2P54868 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.9■□□□□ 0.78
HMGCS2P54868 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
HMGCS2P54868 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HMGCS2P54868 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.89■□□□□ 0.78
HMGCS2P54868 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
HMGCS2P54868 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
HMGCS2P54868 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.89■□□□□ 0.77
HMGCS2P54868 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
HMGCS2P54868 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGCS2P54868 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGCS2P54868 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.89■□□□□ 0.77
HMGCS2P54868 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.89■□□□□ 0.77
HMGCS2P54868 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.89■□□□□ 0.77
HMGCS2P54868 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.89■□□□□ 0.77
HMGCS2P54868 FAM86C2P-203ENST00000528684 1004 ntBASIC19.89■□□□□ 0.77
HMGCS2P54868 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.89■□□□□ 0.77
HMGCS2P54868 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGCS2P54868 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGCS2P54868 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGCS2P54868 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGCS2P54868 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
HMGCS2P54868 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC19.89■□□□□ 0.77
HMGCS2P54868 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 Z92544.3-201ENST00000624747 417 ntBASIC19.89■□□□□ 0.77
HMGCS2P54868 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.89■□□□□ 0.77
HMGCS2P54868 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGCS2P54868 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.88■□□□□ 0.77
HMGCS2P54868 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
HMGCS2P54868 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
HMGCS2P54868 LINC00304-203ENST00000565008 1864 ntBASIC19.88■□□□□ 0.77
HMGCS2P54868 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.88■□□□□ 0.77
HMGCS2P54868 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
HMGCS2P54868 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC19.88■□□□□ 0.77
HMGCS2P54868 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
HMGCS2P54868 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 AL592309.1-201ENST00000443127 649 ntBASIC19.88■□□□□ 0.77
HMGCS2P54868 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.88■□□□□ 0.77
HMGCS2P54868 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.88■□□□□ 0.77
HMGCS2P54868 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.88■□□□□ 0.77
HMGCS2P54868 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC19.88■□□□□ 0.77
HMGCS2P54868 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 LYSMD4-203ENST00000378904 2122 ntBASIC19.88■□□□□ 0.77
HMGCS2P54868 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 ABALON-201ENST00000629058 1903 ntBASIC19.88■□□□□ 0.77
HMGCS2P54868 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGCS2P54868 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
HMGCS2P54868 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HMGCS2P54868 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.87■□□□□ 0.77
HMGCS2P54868 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.87■□□□□ 0.77
HMGCS2P54868 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGCS2P54868 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGCS2P54868 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGCS2P54868 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGCS2P54868 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HMGCS2P54868 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGCS2P54868 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGCS2P54868 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGCS2P54868 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGCS2P54868 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
HMGCS2P54868 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HMGCS2P54868 AC079140.1-201ENST00000508039 487 ntBASIC19.87■□□□□ 0.77
HMGCS2P54868 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.87■□□□□ 0.77
HMGCS2P54868 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.87■□□□□ 0.77
HMGCS2P54868 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.87■□□□□ 0.77
HMGCS2P54868 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19.87■□□□□ 0.77
HMGCS2P54868 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGCS2P54868 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGCS2P54868 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms