Protein–RNA interactions for Protein: P30408

TM4SF1, Transmembrane 4 L6 family member 1, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1P30408 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TM4SF1P30408 CD81-202ENST00000381036 880 ntTSL 3 BASIC21.36■■□□□ 1.01
TM4SF1P30408 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC21.36■■□□□ 1.01
TM4SF1P30408 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC21.36■■□□□ 1.01
TM4SF1P30408 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC21.36■■□□□ 1.01
TM4SF1P30408 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC21.36■■□□□ 1.01
TM4SF1P30408 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.01
TM4SF1P30408 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.36■■□□□ 1.01
TM4SF1P30408 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC21.36■■□□□ 1.01
TM4SF1P30408 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.36■■□□□ 1.01
TM4SF1P30408 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TM4SF1P30408 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TM4SF1P30408 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TM4SF1P30408 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TM4SF1P30408 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
TM4SF1P30408 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TM4SF1P30408 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TM4SF1P30408 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
TM4SF1P30408 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TM4SF1P30408 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
TM4SF1P30408 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC21.36■■□□□ 1.01
TM4SF1P30408 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TM4SF1P30408 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TM4SF1P30408 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TM4SF1P30408 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC21.35■■□□□ 1.01
TM4SF1P30408 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TM4SF1P30408 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.35■■□□□ 1.01
TM4SF1P30408 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TM4SF1P30408 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC21.35■■□□□ 1.01
TM4SF1P30408 AP000842.3-202ENST00000569238 1080 ntBASIC21.35■■□□□ 1.01
TM4SF1P30408 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC21.35■■□□□ 1.01
TM4SF1P30408 AC008267.7-201ENST00000624570 1194 ntBASIC21.35■■□□□ 1.01
TM4SF1P30408 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
TM4SF1P30408 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
TM4SF1P30408 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TM4SF1P30408 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TM4SF1P30408 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.35■■□□□ 1.01
TM4SF1P30408 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC21.35■■□□□ 1.01
TM4SF1P30408 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.35■■□□□ 1.01
TM4SF1P30408 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC21.35■■□□□ 1.01
TM4SF1P30408 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TM4SF1P30408 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TM4SF1P30408 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC21.35■■□□□ 1.01
TM4SF1P30408 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TM4SF1P30408 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
TM4SF1P30408 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TM4SF1P30408 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
TM4SF1P30408 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TM4SF1P30408 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TM4SF1P30408 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TM4SF1P30408 NME2P1-201ENST00000426182 414 ntBASIC21.34■■□□□ 1.01
TM4SF1P30408 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC21.34■■□□□ 1.01
TM4SF1P30408 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC21.34■■□□□ 1.01
TM4SF1P30408 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TM4SF1P30408 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.34■■□□□ 1.01
TM4SF1P30408 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC21.34■■□□□ 1.01
TM4SF1P30408 MIR6080-201ENST00000617359 66 ntBASIC21.34■■□□□ 1.01
TM4SF1P30408 AC025048.6-201ENST00000634326 1161 ntBASIC21.34■■□□□ 1.01
TM4SF1P30408 WASH6P-202ENST00000359512 1437 ntBASIC21.34■■□□□ 1.01
TM4SF1P30408 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC21.34■■□□□ 1.01
TM4SF1P30408 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
TM4SF1P30408 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.34■■□□□ 1.01
TM4SF1P30408 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TM4SF1P30408 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TM4SF1P30408 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.34■■□□□ 1.01
TM4SF1P30408 AC090164.3-201ENST00000610780 2143 ntBASIC21.34■■□□□ 1.01
TM4SF1P30408 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TM4SF1P30408 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC21.33■■□□□ 1.01
TM4SF1P30408 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TM4SF1P30408 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC21.33■■□□□ 1.01
TM4SF1P30408 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC21.33■■□□□ 1.01
TM4SF1P30408 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
TM4SF1P30408 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TM4SF1P30408 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TM4SF1P30408 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TM4SF1P30408 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC21.33■■□□□ 1.01
TM4SF1P30408 AC007274.1-201ENST00000439805 662 ntBASIC21.33■■□□□ 1.01
TM4SF1P30408 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC21.33■■□□□ 1.01
TM4SF1P30408 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC21.33■■□□□ 1.01
TM4SF1P30408 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
TM4SF1P30408 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.33■■□□□ 1.01
TM4SF1P30408 AL596325.1-201ENST00000563991 1082 ntBASIC21.33■■□□□ 1.01
TM4SF1P30408 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC21.33■■□□□ 1.01
TM4SF1P30408 AL662799.1-202ENST00000614205 422 ntBASIC21.33■■□□□ 1.01
TM4SF1P30408 LINC01451-201ENST00000623792 534 ntBASIC21.33■■□□□ 1.01
TM4SF1P30408 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC21.33■■□□□ 1.01
TM4SF1P30408 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
TM4SF1P30408 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TM4SF1P30408 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC21.33■■□□□ 1
TM4SF1P30408 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC21.33■■□□□ 1
TM4SF1P30408 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.33■■□□□ 1
TM4SF1P30408 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC21.33■■□□□ 1
TM4SF1P30408 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.33■■□□□ 1
TM4SF1P30408 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21.33■■□□□ 1
TM4SF1P30408 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC21.33■■□□□ 1
TM4SF1P30408 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.33■■□□□ 1
TM4SF1P30408 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TM4SF1P30408 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TM4SF1P30408 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.32■■□□□ 1
TM4SF1P30408 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms