Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC3P19447 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.08■□□□□ 0.81
ERCC3P19447 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.81
ERCC3P19447 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.08■□□□□ 0.81
ERCC3P19447 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC3P19447 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.08■□□□□ 0.81
ERCC3P19447 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC3P19447 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.08■□□□□ 0.81
ERCC3P19447 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC3P19447 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC3P19447 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
ERCC3P19447 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.08■□□□□ 0.81
ERCC3P19447 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC3P19447 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
ERCC3P19447 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.08■□□□□ 0.81
ERCC3P19447 LBH-203ENST00000404397 543 ntTSL 4 BASIC20.08■□□□□ 0.81
ERCC3P19447 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC20.08■□□□□ 0.81
ERCC3P19447 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.08■□□□□ 0.81
ERCC3P19447 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
ERCC3P19447 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.08■□□□□ 0.81
ERCC3P19447 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.08■□□□□ 0.81
ERCC3P19447 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
ERCC3P19447 MIR4469-201ENST00000583919 79 ntBASIC20.08■□□□□ 0.81
ERCC3P19447 STK25P1-201ENST00000585406 838 ntBASIC20.08■□□□□ 0.81
ERCC3P19447 AC116407.2-201ENST00000613639 860 ntBASIC20.08■□□□□ 0.81
ERCC3P19447 AL513190.1-201ENST00000621254 727 ntBASIC20.08■□□□□ 0.81
ERCC3P19447 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
ERCC3P19447 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ERCC3P19447 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
ERCC3P19447 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.8
ERCC3P19447 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.08■□□□□ 0.8
ERCC3P19447 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
ERCC3P19447 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ERCC3P19447 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
ERCC3P19447 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ERCC3P19447 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.07■□□□□ 0.8
ERCC3P19447 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC20.07■□□□□ 0.8
ERCC3P19447 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
ERCC3P19447 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
ERCC3P19447 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.07■□□□□ 0.8
ERCC3P19447 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.07■□□□□ 0.8
ERCC3P19447 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
ERCC3P19447 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.07■□□□□ 0.8
ERCC3P19447 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.07■□□□□ 0.8
ERCC3P19447 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
ERCC3P19447 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC20.07■□□□□ 0.8
ERCC3P19447 STK19B-204ENST00000512515 211 ntBASIC20.07■□□□□ 0.8
ERCC3P19447 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
ERCC3P19447 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC20.07■□□□□ 0.8
ERCC3P19447 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC20.07■□□□□ 0.8
ERCC3P19447 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.07■□□□□ 0.8
ERCC3P19447 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.07■□□□□ 0.8
ERCC3P19447 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.07■□□□□ 0.8
ERCC3P19447 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
ERCC3P19447 BX276092.7-203ENST00000637198 1536 ntBASIC20.07■□□□□ 0.8
ERCC3P19447 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC3P19447 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC3P19447 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC3P19447 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC3P19447 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC3P19447 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC3P19447 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC3P19447 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC3P19447 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC3P19447 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC3P19447 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.06■□□□□ 0.8
ERCC3P19447 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.06■□□□□ 0.8
ERCC3P19447 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.06■□□□□ 0.8
ERCC3P19447 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
ERCC3P19447 CFL1-202ENST00000524553 860 ntTSL 2 BASIC20.06■□□□□ 0.8
ERCC3P19447 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
ERCC3P19447 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.06■□□□□ 0.8
ERCC3P19447 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.06■□□□□ 0.8
ERCC3P19447 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.06■□□□□ 0.8
ERCC3P19447 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
ERCC3P19447 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
ERCC3P19447 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.06■□□□□ 0.8
ERCC3P19447 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC3P19447 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
ERCC3P19447 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
ERCC3P19447 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.05■□□□□ 0.8
ERCC3P19447 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
ERCC3P19447 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC3P19447 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC3P19447 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms