Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHA3Q9Y5H8 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 AC092068.3-201ENST00000587894 2016 ntBASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHA3Q9Y5H8 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.14■□□□□ 0.5
PCDHA3Q9Y5H8 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
PCDHA3Q9Y5H8 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 EGFEM1P-202ENST00000431685 1563 ntBASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 RCN1P1-201ENST00000400413 996 ntBASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 AC246785.2-201ENST00000432512 513 ntBASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 RN7SL850P-201ENST00000579959 291 ntBASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
PCDHA3Q9Y5H8 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 AL135999.2-201ENST00000622438 1686 ntBASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 AC009533.2-201ENST00000543664 586 ntBASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 RNF216P1-203ENST00000404404 2427 ntBASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PCDHA3Q9Y5H8 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms